Package: PopPsiSeqR
Type: Package
Title: Process and Visualize Evolve & Resequence Experiments
Version: 1.0.2
Date: 2026-1-11
Authors@R: 
    person("Charles", "Soeder", , "csoeder@email.unc.edu", role = c("aut", "cre", "cph"))
Description: Handle data from evolve and resequence experiments. 
    Measured allele frequencies (e.g., from variants called from high-throughput 
    sequencing data) are compared using an update of the PsiSeq algorithm 
    (Earley, Eric and Corbin Jones (2011) <doi:10.1534/genetics.111.129445>). 
    Functions for saving and loading important files are also included, as well 
    as functions for basic data visualization.
URL: https://github.com/csoeder/PopPsiSeq,
        https://github.com/csoeder/PopPsiSeqR
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.3.3
Imports: rtracklayer, GenomicRanges, ggplot2, dplyr, S4Vectors,
        magrittr, ggbio, withr, utils, patchwork, tidyr, rlang,
        devtools
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
BugReports: https://github.com/csoeder/PopPsiSeqR/issues
NeedsCompilation: no
Packaged: 2026-01-11 22:44:57 UTC; csoeder
Author: Charles Soeder [aut, cre, cph]
Maintainer: Charles Soeder <csoeder@email.unc.edu>
Repository: CRAN
Date/Publication: 2026-01-12 14:20:08 UTC
Built: R 4.5.3; ; 2026-03-18 05:14:15 UTC; windows
