# Bayesian Model for Genotyping using RNA-Seq

## Documentation for package ‘bbmix’ version 1.0.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package README

## Help Pages

bbmix-package | The 'bbmix' package.
bbmix | The 'bbmix' package.
call_gt | Call genotypes using beta binomial after model training
call_help | call gt helper, calculate mean dbetabinom from all posterior samples
ex_alt_hom | Exclude fSNPs with no alternative allele in any sample. Also exclude fSNPs if all samples are hom.
fit_bb | Fit beta binomial distribution to allelic counts for homozygous reference, heterozygous, homozygous alternative
gt_help | call gt helper, get posterior mean, expected gt and sd expected gt across all samples
poolreads | Pool randomly selected reads from different files