mrcImageROI
Usage
Usage: mrcImageROI
Options:
[-i[nput] In (NULL ).as(inFile::mrcImage ) ] :Essential :Input
[-o[utput] Out (NULL ).as(outFile::mrcImage ) ] :Essential :Output
[-r[oi] blx (0.0 ).as(Real )
bly (0.0 ).as(Real )
brx (0.0 ).as(Real )
bry (0.0 ).as(Real )
trx (0.0 ).as(Real )
try (0.0 ).as(Real )
tlx (0.0 ).as(Real )
tly (0.0 ).as(Real ) ] :Optional :Rectangle ROI
[-x WidthBeforeExpansion(1.0 ).as(Real ) ] :Optional :Width before expansion: /* Default is set by -r */
[-y HeightBeforeExpansion(1.0 ).as(Real ) ] :Optional :Height before expansion: /* Default is set by -r */
[-a[ngle] Angle (0.0 ).as(Real ) ] :Optional :This value [degree] is added to angle of current source image.
[-W WidthAfterExpansion (1.0 ).as(Real ) ] :Optional :Width after expansion[Pixel]
[-H HeightAfterExpansion(1.0 ).as(Real ) ] :Optional :Height after expansion[Pixel]:
ROI Size is (10,20):
If -W 30 -H 40, out (30,40)
If -W 30, out (30, 20*30/10)
If -H 40, out (10*40/20,40)
If omitted, out (10,20)
[-Shift ShiftX (0.0 ).as(Real )
ShiftY (0.0 ).as(Real ) ] :Optional :ROI ARea Shift [Pixel]
[-turePitch truePitch (430.0 ).as(Real ) ] :Optional :truePitch [A]
[-dY dY (0.0 ).as(Real ) ] :Optional :Number of turePitch
[-Ly Ly (5.0 ).as(Real ) ] :Optional :Header Length y [A/Pixel]
[-S[hrink] Shrink (1 ).as(Integer ) ] :Optional :When inputfile is shrinked
[-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
[-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
---- mode ----
0: Nearest Neighbor Method
1: Bilinear method
2: Cubic Convolution method
3: Polynominal method
---- Note (Magnification change for normalize)----
-truePitch, -dY and -Ly options make
H[pixel] = truePitch[A] / Ly[A/pixel] x dY