Basic Statistics
Measure | Value |
---|---|
Filename | SRR3192399_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 76795926 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGG | 314723 | 0.4098173124444128 | No Hit |
CGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGG | 297157 | 0.386943703237591 | No Hit |
CCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCCAGGAGTT | 201093 | 0.26185373427231023 | No Hit |
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGA | 188981 | 0.2460820643011714 | No Hit |
CCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCCAGGAGTT | 188644 | 0.24564323893952397 | No Hit |
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGA | 175691 | 0.2287764587928792 | No Hit |
GCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAG | 161272 | 0.21000072321544766 | No Hit |
GCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAG | 156122 | 0.2032946383119334 | No Hit |
GTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGG | 151653 | 0.1974753191985731 | No Hit |
GGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATT | 137071 | 0.17848733277856432 | No Hit |
GTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCCAGGAG | 108370 | 0.1411142565036588 | No Hit |
GTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCCAGGAG | 101727 | 0.1324640580543296 | No Hit |
CTTGAGTCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCC | 92267 | 0.12014569627039852 | No Hit |
AGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGT | 90653 | 0.11804402228316122 | No Hit |
CAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAG | 83134 | 0.10825313832403037 | No Hit |
CGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCT | 82290 | 0.10715412169129909 | No Hit |
CGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCT | 79765 | 0.10386618685996442 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGCGATC | 24870 | 0.0 | 55.35533 | 2 |
GGGCGAT | 25650 | 0.0 | 53.763668 | 1 |
CGGTGGC | 136595 | 0.0 | 46.981865 | 1 |
GCGATCT | 31060 | 0.0 | 44.51995 | 3 |
GCGGTGG | 72965 | 0.0 | 44.037697 | 1 |
CGATCTG | 34145 | 0.0 | 41.002064 | 4 |
GGTGGCG | 168155 | 0.0 | 37.94882 | 2 |
GGCGCGT | 174375 | 0.0 | 36.41337 | 5 |
TGGCGCG | 176745 | 0.0 | 35.98543 | 4 |
GTGGCGC | 180460 | 0.0 | 35.321877 | 3 |
GCGCGTG | 186820 | 0.0 | 34.031075 | 6 |
CGCGTGC | 201745 | 0.0 | 31.45034 | 7 |
GCGTGCC | 212675 | 0.0 | 29.935658 | 8 |
CGTGCCT | 223140 | 0.0 | 28.613844 | 9 |
CCTGTAG | 251900 | 0.0 | 20.122364 | 12-13 |
TGTAGTC | 261675 | 0.0 | 19.271544 | 14-15 |
TAGTCCC | 263760 | 0.0 | 19.05902 | 16-17 |
TGCCTGT | 275415 | 0.0 | 18.49493 | 10-11 |
GTGCCTG | 262795 | 0.0 | 18.44519 | 10-11 |
GCTGCGA | 44585 | 0.0 | 18.40818 | 10-11 |