Basic Statistics
Measure | Value |
---|---|
Filename | SRR3192400_1_val_1.fq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 94925479 |
Sequences flagged as poor quality | 0 |
Sequence length | 20-100 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 117905 | 0.0 | 47.464825 | 1 |
GTATCAA | 195700 | 0.0 | 35.70887 | 1 |
GAGTACA | 229515 | 0.0 | 32.918365 | 1 |
GTACATG | 357755 | 0.0 | 31.666025 | 1 |
TACATGG | 364295 | 0.0 | 30.62563 | 2 |
AGTACAT | 241500 | 0.0 | 30.51852 | 2 |
CAACGCA | 231895 | 0.0 | 29.304852 | 5 |
ATCAACG | 235235 | 0.0 | 28.816612 | 3 |
ACATGGG | 386600 | 0.0 | 28.265326 | 3 |
TCAACGC | 246475 | 0.0 | 27.793564 | 4 |
CTAGTAC | 38960 | 0.0 | 27.681622 | 3 |
CTAACGC | 15290 | 0.0 | 27.51868 | 3 |
AACGCAG | 251890 | 0.0 | 27.22277 | 6 |
TATCAAC | 255055 | 0.0 | 27.002003 | 2 |
TAACGCC | 15185 | 0.0 | 26.921421 | 4 |
CATGGGG | 308870 | 0.0 | 25.994724 | 4 |
GTACTAG | 29120 | 0.0 | 25.907225 | 1 |
CTGTGCG | 42090 | 0.0 | 25.614145 | 9 |
TCTAACG | 16555 | 0.0 | 24.828247 | 2 |
TCGACGG | 16050 | 0.0 | 23.281467 | 94 |