Basic Statistics
Measure | Value |
---|---|
Filename | SRR3192400_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 95791942 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 185189 | 0.19332419422084585 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 168674 | 0.1760837044101267 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 121091 | 0.12641042395820726 | No Hit |
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC | 96212 | 0.10043851078830826 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 118000 | 0.0 | 49.470978 | 1 |
GTATCAA | 195020 | 0.0 | 37.60692 | 1 |
GAGTACA | 231510 | 0.0 | 34.89127 | 1 |
GTACATG | 361270 | 0.0 | 33.488094 | 1 |
TACATGG | 368120 | 0.0 | 32.36864 | 2 |
AGTACAT | 244325 | 0.0 | 32.187504 | 2 |
CAACGCA | 232300 | 0.0 | 30.821405 | 5 |
ATCAACG | 234550 | 0.0 | 30.39838 | 3 |
ACATGGG | 391855 | 0.0 | 29.8454 | 3 |
CTAGTAC | 39900 | 0.0 | 29.222895 | 3 |
TCAACGC | 247340 | 0.0 | 29.148499 | 4 |
AACGCAG | 252100 | 0.0 | 28.647272 | 6 |
CTAACGC | 15605 | 0.0 | 28.638866 | 3 |
TATCAAC | 256165 | 0.0 | 28.262024 | 2 |
TAACGCC | 15515 | 0.0 | 28.170969 | 4 |
CATGGGG | 315205 | 0.0 | 27.378876 | 4 |
CTGTGCG | 42330 | 0.0 | 26.960876 | 9 |
TCTAACG | 16945 | 0.0 | 25.932442 | 2 |
TAGTACT | 52235 | 0.0 | 24.366882 | 4 |
CCTAGTA | 48510 | 0.0 | 23.747034 | 2 |