FastQCFastQC Report
Tue 3 May 2016
SRR3192396_1_val_1.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3192396_1_val_1.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences104413184
Sequences flagged as poor quality0
Sequence length20-101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA5394750.5166732584268285No Hit
GTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGT5053360.48397719582998255No Hit
TTTTGACCTGCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCA4747810.45471364995439656No Hit
GTTTTGACCTGCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGC4312370.41301010416462347No Hit
GCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTT4153970.3978396061554832No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG2895370.27729927285810957No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT2375140.22747510505952964No Hit
CACGGGAGTTTTGACCTGCTCCGTTTCCGACCTGGGCCGGTTCACCCCTC2309440.22118279622619302No Hit
AGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTG2287110.21904417740962676No Hit
CAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTT1944860.18626574973520585No Hit
ATTTGAAGTAGATAGAAACCGACCTGGATTACTCCGGTCTGAACTCAGAT1941760.18596885236255223No Hit
GGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGACC1876390.17970814873340132No Hit
GGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCA1765570.16909454652776415No Hit
GGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAA1677580.16066744981170195No Hit
GCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT1569410.1503076469730106No Hit
CTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACG1475960.14135762778769392No Hit
AATTTGAAGTAGATAGAAACCGACCTGGATTACTCCGGTCTGAACTCAGA1334940.12785167053233432No Hit
CGGGGGTCTTAGCTTTGGCTCTCCTTGCAAAGTTATTTCTAGTTAATTCA1284600.12303044029382344No Hit
GGACCTTGAGAGCTTGTTTGGAGGTTCTAGCAGGGGAGCGCAGCTACTCG1271360.12176240119255437No Hit
GGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAA1261300.12079892133162035No Hit
GGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGACCTGCTCCGTTTC1189670.11393867655640115No Hit
GCGCGATCCCACTACTGATCAGCACGGGAGTTTTGACCTGCTCCGTTTCC1106580.10598086923582371No Hit
CCCGCTTCTTCGGTTCCCGCCTCCTCCCCGTTCACCGCCGGGGCGGCTCG1068100.10229551088107801No Hit
GCTTGTTTGGAGGTTCTAGCAGGGGAGCGCAGCTACTCGTATACCCTTGA1050700.10062905466037698No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACTTCGC270350.024.916447
CTCGCTA873000.023.8377238
TCGCTAT911850.023.0302669
GTCTCGC963900.021.9355416
GATGTGT754850.021.7361372
GGGGGGT686000.021.6415351
TAAGCGT372200.021.58756682-83
GGGGTCT2165150.020.9934773
CCCTACG662900.020.2215532-33
CTACGTT677300.019.83046734-35
TCTCGCT1078600.019.7616967
GGATGTG858650.019.2219811
GGTCTCG1131150.019.1178475
CACTTCG364200.018.915266
TGCGGAC1530450.018.87812292-93
GGGGGTC1429350.018.7635172
AACGAAC866950.018.75679276-77
CGAACCT874150.018.5719378-79
ACTACCC734250.018.25302328-29
GGTCTTA1213100.018.2118135