Basic Statistics
Measure | Value |
---|---|
Filename | SRR3192401_2_val_2.fq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 95236637 |
Sequences flagged as poor quality | 0 |
Sequence length | 20-100 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 100747 | 0.10578596974187571 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 113425 | 0.0 | 46.802753 | 1 |
GTATCAA | 196950 | 0.0 | 37.27803 | 1 |
GTACATG | 355810 | 0.0 | 33.796448 | 1 |
GAGTACA | 219025 | 0.0 | 32.869823 | 1 |
TACATGG | 362455 | 0.0 | 32.64803 | 2 |
CAACGCA | 225140 | 0.0 | 31.678532 | 5 |
ATCAACG | 230380 | 0.0 | 30.983706 | 3 |
AGTACAT | 231755 | 0.0 | 30.339088 | 2 |
ACATGGG | 385055 | 0.0 | 30.24316 | 3 |
TCAACGC | 242505 | 0.0 | 29.64493 | 4 |
AACGCAG | 243135 | 0.0 | 29.548367 | 6 |
CTAACGC | 16465 | 0.0 | 29.186913 | 3 |
TAACGCC | 16385 | 0.0 | 28.89602 | 4 |
TATCAAC | 250575 | 0.0 | 28.884108 | 2 |
CTAGTAC | 37305 | 0.0 | 28.099718 | 3 |
CATGGGG | 306290 | 0.0 | 27.95934 | 4 |
GTACTAG | 29950 | 0.0 | 27.773193 | 1 |
CTGTGCG | 38945 | 0.0 | 26.736876 | 9 |
TCTAACG | 17600 | 0.0 | 26.730154 | 2 |
ACGCAGA | 283460 | 0.0 | 25.002756 | 7 |