Basic Statistics
Measure | Value |
---|---|
Filename | SRR3192399_2_val_2.fq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 74334517 |
Sequences flagged as poor quality | 0 |
Sequence length | 20-100 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGG | 304805 | 0.4100450400451246 | No Hit |
CGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGG | 291703 | 0.3924193117445022 | No Hit |
CCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCCAGGAGTT | 197387 | 0.26553882094908887 | No Hit |
CCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCCAGGAGTT | 184020 | 0.24755659608308211 | No Hit |
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGA | 181663 | 0.244385794556249 | No Hit |
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGA | 172230 | 0.23169586209862642 | No Hit |
GCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAG | 155722 | 0.20948814398027232 | No Hit |
GCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAG | 153085 | 0.20594066683718412 | No Hit |
GTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGG | 148476 | 0.1997403171396136 | No Hit |
GTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCCAGGAG | 106179 | 0.14283942949410702 | No Hit |
GGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATT | 99601 | 0.13399024305222834 | No Hit |
GTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCCAGGAG | 98779 | 0.13288443106450804 | No Hit |
CTTGAGTCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCC | 90744 | 0.12207518614804479 | No Hit |
AGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGT | 88966 | 0.11968329598482491 | No Hit |
CAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAG | 81506 | 0.1096475813517427 | No Hit |
CGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCT | 80470 | 0.10825388157159883 | No Hit |
CGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCT | 76866 | 0.1034055282823725 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGCGATC | 23435 | 0.0 | 56.553898 | 2 |
GGGCGAT | 23980 | 0.0 | 55.28757 | 1 |
CGGTGGC | 131025 | 0.0 | 45.037018 | 1 |
GCGATCT | 29555 | 0.0 | 44.811962 | 3 |
GCGGTGG | 70100 | 0.0 | 43.736134 | 1 |
CGATCTG | 33050 | 0.0 | 40.524796 | 4 |
GGTGGCG | 162235 | 0.0 | 36.162537 | 2 |
GGCGCGT | 170235 | 0.0 | 34.408947 | 5 |
TGGCGCG | 172405 | 0.0 | 33.99486 | 4 |
GTGGCGC | 175925 | 0.0 | 33.306747 | 3 |
GCGCGTG | 182375 | 0.0 | 32.147686 | 6 |
CGCGTGC | 196755 | 0.0 | 29.78821 | 7 |
GCGTGCC | 206965 | 0.0 | 28.338488 | 8 |
CGTGCCT | 217545 | 0.0 | 27.004213 | 9 |
TTCGTTG | 14535 | 0.0 | 22.687078 | 94 |
CGCGCAC | 7155 | 0.0 | 20.382715 | 94 |
CCTGTAG | 244105 | 0.0 | 19.550694 | 12-13 |
ACGCACG | 19030 | 0.0 | 19.073854 | 94 |
TGTAGTC | 255760 | 0.0 | 18.614695 | 14-15 |
TAGTCCC | 257820 | 0.0 | 18.416594 | 16-17 |