Package	Download_score
annotation	51
variants	30
generegulation	25
liftOver	260
rnaseqGene	149
highthroughputassays	27
proteomics	8
chipseqDB	26
arrays	37
eQTL	7
sequencing	31
simpleSingleCell	39
methylationArrayAnalysis	145
ExpressionNormalizationWorkflow	29
RnaSeqGeneEdgeRQL	51
RNAseq123	114
cytofWorkflow	67
TCGAWorkflow	58
recountWorkflow	26
testproj	0
EGSEA123	24
rnaseqDTU	43
BiocMetaWorkflow	23
maEndToEnd	69
csawUsersGuide	22
CAGEWorkflow	22
BgeeCall	2
SingscoreAMLMutations	24
fluentGenomics	25
BP4RNAseq	20
ExpHunterSuite	21
GeoMxWorkflows	183
ComplexHeatmap	3
farver	168
callr	255
processx	290
ps	343
igraph	194
tinytex	413
broom	118
gert	110
dtplyr	18
rvest	169
modelr	21
patchwork	85
readxl	51
bdsmatrix	6
reldist	1
RcppEigen	197
Rtsne	29
fitdistrplus	18
ica	4
gargle	35
lintr	103
rex	3
testthat	303
fields	7
maps	14
reticulate	83
SeuratObject	32
spatstat.core	3
spatstat.sparse	28
quantreg	74
DBI	370
vctrs	234
cachem	306
Rcpp	373
httr	111
cluster	94
iterators	8
locfit	101
nnet	43
foreign	64
data.table	391
ape	44
babelgene	1
benchmarkme	1
dbscan	8
magick	26
dplyr	191
generics	22
optparse	35
snow	13
RcppHNSW	23
gmp	9
ggplot2	378
pdist	1
ragg	247
renv	138
xgboost	128
shinyFiles	3
spatial	36
RCurl	216
shiny	327
magrittr	16
digest	450
commonmark	241
sass	323
ade4	3
segmented	23
utf8	196
dichromat	5
NMF	6
dendextend	35
purrr	97
vegan	33
shadowtext	49
flowWorkspaceData	0
TSP	11
kernlab	39
ddalpha	1
robustbase	29
gower	5
e1071	85
inum	3
libcoin	4
pamr	1
randomForest	21
openxlsx	69
Bioconductor	1
ellipsis	10
expss	2
WGCNA	6
DESeq2	6
shinythemes	2
prettyunits	146
pool	11
pingr	18
config	13
Peptides	1
RClickhouse	0
aws.s3	1
ggstatsplot	3
insight	19
datawizard	15
DelayedArray	5
castor	2
seqpac	24
org.Mm.eg.db	2
tidygraph	45
graphlayouts	65
minqa	110
scatterplot3d	10
ggfun	68
ggraph	36
fontawesome	87
png	37
DEoptimR	15
limma	21
BSgenome.Hsapiens.UCSC.hg19	1
km.ci	2
caret	10
ModelMetrics	1
dimRed	0
nanostringr	1
mclust	22
filelock	74
pheatmap	1
rapportools	1
emayili	2
collapse	1
clock	19
cobalt	2
drake	8
dockerfiler	1
duckdb	4
workflows	4
ymlthis	0
gld	1
ggdag	1
lbfgs	0
mlr3	3
nleqslv	1
ParamHelpers	1
posterior	3
R.cache	2
palmerpenguins	1
rstpm2	1
projpred	1
RApiSerialize	10
qs	14
paws.compute	73
rgl	5
saemix	0
rticles	1
sf	44
TMB	36
tune	5
sm	1
tidyposterior	1
GeomxTools	0
genefu	0
distributional	7
Brobdingnag	1
dparser	0
gsDesign	1
fixest	1
bayestestR	11
flexclust	3
ggRandomForests	0
mapbayr	0
JuliaCall	0
iml	1
BBmisc	1
mlr	1
mrgmisc	1
osqp	3
party	75
progressr	34
scam	1
rstan	5
RefManageR	1
templater	1
webfakes	1
modeltools	1
rms	5
apcluster	1
fastmap	211
AUCell	1
annotate	2
BiocIO	1
pcaMethods	1
promises	257
Rhdf5lib	3
SBGNview.data	0
dittoSeq	1
scater	1
SingleCelLExperiment	0
decoupleR	1
motifmatchr	2
minpack.lm	5
cubelyr	0
bigD	6
eha	1
DEoptim	0
juicyjuice	0
HDInterval	1
Matching	3
jpeg	14
nlmixr2lib	1
log4r	1
RcppDE	0
mrgvalprep	1
nlmixr2est	1
slickR	0
NMcalc	1
gap	1
gamlss	4
styler	51
rmutil	1
XLConnect	1
msm	8
nanotime	2
tidyvpc	1
survivalROC	1
GPArotation	8
ggbeeswarm	5
modelenv	3
RApiDatetime	1
AnnotationDbi	22
rlang	489
genefilter	2
evaluate	432
knitr	317
bookdown	22
devtools	11
pkgload	326
roxygen2	169
furrr	3
globals	60
tweenr	44
hms	44
AnVIL	0
checkmate	252
gplots	145
statmod	5
plyr	119
RcppAnnoy	28
Rdpack	44
future.apply	187
tidytree	42
readr	119
webshot	19
multcomp	122
remotes	143
sessioninfo	4
sfsmisc	4
spam	8
plotly	125
tidyr	262
spatstat.utils	35
spatstat.geom	40
uwot	105
conquer	3
blob	54
memoise	12
FNN	157
restfulr	3
rpart	65
aplot	44
assertive.properties	8
brew	44
enrichR	2
shinyjs	5
desc	107
fansi	218
stringdist	11
formatR	33
Matrix	447
gtable	226
MASS	366
scales	139
RColorBrewer	16
circlize	49
msigdbr	1
shinyalert	17
openssl	455
BiocManager	307
htmltools	364
htmlwidgets	169
shape	66
codetools	92
rngtools	2
lsa	1
ggsignif	10
IRanges	10
Biobase	9
Gviz	2
packrat	26
RPostgres	84
rsconnect	40
org.Rn.eg.db	1
rtkore	1
HandTill2001	1
mice	4
singleCellTK	0
cxAnalysis	0
batchelor	1
BiocParallel	7
highr	152
formatters	6
sjPlot	2
raster	15
terra	38
GLAD	0
BSgenome	3
bit	86
shinycssloaders	14
pkgconfig	2
hexbin	12
rematch2	1
proj4	12
sp	90
RobustRankAggreg	0
future.callr	4
qqconf	1
FactoMineR	20
nloptr	53
visNetwork	4
writexl	24
clusterprofielr	0
curatedMetagenomicData	0
ipred	21
recipes	50
epiR	2
bit64	56
doBy	7
units	31
h2o	4
lares	1
rpart.plot	1
pdftools	8
deSolve	10
dittodb	0
campsismod	0
evd	4
webmockr	0
xaringanthemer	0
fork	1
forecast	9
ggPMX	1
gamlss.dist	4
interp	19
ipaddress	1
jsTreeR	1
klaR	4
lpSolveAPI	2
paletteer	12
precommit	1
partitions	0
pins	15
prismatic	9
pointblank	1
pmtables	1
randtoolbox	1
Rsmlx	0
R.rsp	0
rclipboard	8
rhub	3
s2	34
spatialreg	0
tracee	1
profile	0
spaMM	1
reda	0
sparklyr	2
vaultr	1
sensitivity	1
amgen.okta.client	1
DOSE	2
Markdown	0
GMD	0
collections	0
brms	1
Exact	3
dotCall64	11
esquisse	15
gridtext	3
dtw	1
dtwclust	2
languageserver	2
nonmemica	0
lgr	1
NMdata	1
memisc	1
pagedown	2
PKNCA	0
network	3
pkgdepends	11
padr	1
pkgcache	11
smoothHR	0
riskRegression	1
wk	36
Runuran	1
ucminf	7
shinySelect	0
yardstick	13
tfruns	6
SparseM	61
polspline	4
Rgraphviz	1
gWidgets2tcltk	0
imcRtools	0
clusterProfiler	3
expm	25
survMisc	1
BiasedUrn	2
Cubist	1
doRNG	4
bigreadr	1
fracdiff	5
quarto	8
nlmixr2data	1
servr	7
npde	1
timereg	1
rxode2et	1
rvg	2
rngWELL	1
vcr	0
mclogit	0
ks	9
keyring	6
huxtable	3
timechange	197
pillar	45
Biostrings	7
RcppArmadillo	259
rstudioapi	148
emmeans	64
parallelly	202
ggforce	47
haven	79
reprex	77
backports	124
mvtnorm	127
RSpectra	61
Seurat	41
rbibutils	40
ggplotify	15
rvcheck	4
googledrive	24
uuid	248
hunspell	32
svglite	23
mathjaxr	1
plotrix	14
pkgbuild	146
rcmdcheck	3
rversions	10
waldo	190
diffobj	3
zip	188
gh	122
gitcreds	10
svMisc	0
lmtest	4
spatstat.data	35
TH.data	117
RSQLite	202
jsonlite	242
clue	45
foreach	8
doParallel	5
survival	243
R.utils	94
R.methodsS3	8
R.oo	68
sitmo	2
Hmisc	46
htmlTable	40
brio	178
rprojroot	133
BH	224
stringr	189
stringi	399
Cairo	20
ClusterR	1
mgcv	257
colorspace	131
gtools	45
pROC	31
parsedate	4
proxy	2
R6	12
later	160
withr	328
bslib	386
fs	231
rtracklayer	3
curl	450
reshape2	4
bibtex	2
RCircos	0
ggpubr	13
ggrepel	281
polynom	3
permute	2
XVector	2
heatmaply	10
seriation	34
BiocFileCache	5
MOFA2	1
shinydashboard	3
CVST	0
geometry	1
magic	1
caTools	20
forrester.metadata	0
BiocGenerics	17
ExploreModelMatrix	0
markdown	95
webdriver	0
treeio	1
mc2d	2
lme4	127
rstatix	11
listenv	59
ellipse	19
yulab.utils	68
BiocInstaller	1
oligo	1
edgeR	2
rols	0
DMRcate	1
cmprsk	4
assertthat	2
prodlim	33
numDeriv	1
ccaPP	1
quadprog	1
diceR	1
questionr	1
registry	1
qpdf	4
rmdformats	1
av	1
admiral	2
asciicast	1
blogdown	0
coro	1
covr	11
csv	0
WeightIt	2
flexsurv	1
flextable	18
gmm	2
gt	39
corrr	0
gam	3
geepack	11
glmmTMB	4
gnm	1
golem	11
hardhat	45
gbm	111
JM	0
infer	5
lobstr	3
mlr3measures	2
mrgsolve	1
modeldata	4
NonCompart	1
optmatch	3
parsnip	7
paradox	1
narray	0
pcaPP	12
randomForestSRC	3
pls	4
RPostgreSQL	4
RBesT	1
rrcov	13
RcppCCTZ	1
rsample	12
sortable	7
RItools	2
ranger	18
shiny.router	1
splines2	1
svd	1
transformr	0
robust	8
V8	77
bitops	93
reactome.db	2
BSgenome.Hsapiens.UCSC.hg38	3
classInt	18
admiral.test	0
ggcorrplot	2
admiraldev	1
crul	102
gee	2
gganimate	1
DHARMa	0
ergm	0
httr2	155
distill	1
labelled	15
mrgda	1
mlr3misc	2
GA	109
ndjson	0
pracma	18
pak	4
RMySQL	5
NMproject	1
reactlog	1
psych	131
Rwave	1
tables	2
RSiena	1
jomo	0
Rttf2pt1	2
tseries	10
xts	36
tictoc	12
Tplyr	2
clusterCrit	1
coin	1
graph	1
glmmADMB	0
INLA	0
IRkernel	1
viridislite	0
base64enc	1
carData	3
fastmatch	23
survminer	4
xtable	3
dlstats	0
bs4Dash	11
boot	84
mrgvalidate	1
changepoint	6
keras	7
nlmixr2plot	1
Rcsdp	0
RODBC	3
repurrrsive	1
rgeos	7
rxode2	1
PKI	7
RsSimulx	0
xpose	0
dials	8
nlmixr2extra	1
gettz	0
vioplot	1
mapdata	1
morpheus	1
GenomeInfoDbData	4
GenomeInfoDb	10
tibble	45
rmarkdown	395
estimability	25
forcats	11
future	214
googlesheets4	30
tarchetypes	9
tidyverse	11
scPipe	0
viridis	212
bbmle	5
MatrixModels	78
systemfonts	305
lubridate	79
metap	4
sandwich	18
usethis	159
downlit	101
leiden	17
zoo	20
pbapply	21
cpp11	250
scattermore	7
sctransform	16
goftest	1
deldir	48
sn	3
mnormt	5
VAM	1
glue	207
rjson	43
xml2	151
latticeExtra	9
clipr	10
class	39
colourpicker	9
credentials	48
crosstalk	124
cli	375
tidyselect	252
dbplyr	228
XML	154
xfun	460
lattice	206
matrixStats	228
irlba	9
isoband	35
nlme	239
viridisLite	63
pkgdown	127
textshaping	187
shinyBS	2
shinyWidgets	112
shinyjqui	1
shinytest	3
tzdb	42
vroom	137
mime	16
crayon	178
httpuv	349
lifecycle	200
DT	185
yaml	293
sys	106
seqinr	6
idr	0
VennDiagram	2
GlobalOptions	1
GetoptLong	4
pkgmaker	2
SnowballC	5
cowplot	104
S4Vectors	10
biomaRt	2
qap	6
scatterpie	48
BiocVersion	20
blockcluster	1
DRR	0
glmnet	12
partykit	4
labeling	135
gdata	18
KEGGREST	10
Formula	15
weights	3
ggtree	3
ssh	3
jose	2
cytolib	1
aws.signature	1
RMariaDB	21
performance	13
parameters	13
polyclip	98
distr	1
car	24
maptools	9
mixOmics	1
targets	12
MatrixGenerics	2
biostatUtil	0
lava	47
PerformanceAnalytics	0
kohonen	1
progress	130
Rd2roxygen	0
hwriter	3
bsplus	1
GenomicRanges	4
broom.helpers	15
arm	5
cem	0
bbr	1
binr	0
arrow	13
dfidx	1
clinPK	0
cmdstanr	1
datamods	16
doMC	2
Epi	3
cubature	2
fda	3
flexdashboard	2
dm	1
workflowsets	4
xaringan	1
ggeffects	4
gtsummary	4
ggdist	7
lambdr	1
lotri	0
lavaan	9
metafor	7
nhanesA	0
plm	1
plumber	20
paws.common	117
scico	1
spData	13
spacetime	3
systemfit	0
tidymodels	5
urca	7
timeDate	37
scidb	0
GOSemSim	2
KernSmooth	82
PhosR	0
rhdf5	2
DBItest	1
chron	3
gghighlight	1
learnr	7
ggtext	4
ggridges	37
DescTools	19
lpSolve	12
mets	1
n1qn1	0
latex2exp	1
protolite	1
paws.application.integration	5
rainbow	2
officer	19
matrixcalc	1
RSEIS	1
vegawidget	1
statnet.common	2
rsvg	4
irr	1
multtest	1
qvalue	1
pcaExplorer	0
sjstats	2
MutationalPatterns	0
SummarizedExperiment	3
GenomicAlignments	3
org.Hs.eg.db	3
DelayedMatrixStats	3
Homo.sapiens	0
hdf5r	15
lazyeval	1
exactRankTests	1
babelmixr2	1
badger	0
AsioHeaders	5
foghorn	1
lhs	6
mapproj	2
nlmixr2	1
RcppGSL	3
reactable	2
Rook	1
MatchIt	3
pmforest	1
assertr	3
slider	8
shinybusy	21
rxode2parse	1
shinyMobile	1
sensobol	1
rxode2ll	1
yaImpute	2
rxode2random	1
tensorflow	9
whisker	17
ordinal	7
MCPcounter	0
variancePartition	1
preprocessCore	1
dada2	0
bigassertr	1
bayesplot	2
GenomicFeatures	3
RUVseq	0
BioVersion	1
Signac	7
sparsesvd	3
reshape	4
vhydeg	0
BiocSingular	2
ashr	1
ggh4x	4
beachmat	1
mosaicCore	25
Rmisc	1
hsm	0
triebeard	5
lemon	2
tigris	17
harmony	8
enrichplot	2
timeSeries	11
escape	1
paws.security.identity	5
paws.cost.management	5
paws.storage	114
countrycode	7
odbc	27
HDF5Array	2
HDO.db	1
VGAM	6
maxLik	1
biclust	0
biobank	1
ggvenn	1
fdrtool	5
chromote	21
stringfish	11
spdep	9
bigrquery	4
MAST	1
ncdf4	13
SingleCellExperiment	2
modules	1
intervals	2
pan	1
sfheaders	21
scran	2
RcppParallel	15
loo	6
sccs	0
sparseMatrixStats	1
chimeraviz	0
rhdf5filters	1
anndata	0
arrayop	1
revealgenomics	1
rhino	19
gsl	3
truncnorm	4
subselect	1
recommenderlab	1
GSVA	1
fastDummies	18
mmrm	35
wdman	2
jtools	1
CAM	1
corpcor	2
GSVAdata	0
plogr	1
ChemmineR	1
npsurv	1
munsell	135
MSnbase	1
TFBSTools	1
ANCOMBC	1
littler	1
argusDS.data.preparation	1
PossibilityCurves	1
elasticsearchr	1
BSgenome.Mmusculus.UCSC.mm39	0
striprtf	0
argusDS.gamlss.modelling	3
vip	1
optimx	6
rematch	72
geosphere	1
scMerge	0
arsenal	1
Rfast	7
SPARQL	1
chemometrics	1
RcppNumerical	1
gss	4
LambertW	3
janeaustenr	4
rsnps	0
waiter	5
mboost	3
argusDS.FCUtilities	1
winboxr	1
PMCMRplus	3
BayesFactor	2
azcore	1
osprey	1
RNeXML	0
jnjtemplates	1
getopt	5
rcompanion	1
adephylo	1
adegraphics	1
acepack	2
reactR	53
rbioapi	2
DRDID	0
sysfonts	2
stargazer	0
tmap	1
geojsonsf	0
randomizr	0
reclin	0
philentropy	2
rJava	112
MALDIquant	5
colorRamps	5
timetk	2
gRain	1
ReactomePA	1
shinytoastr	1
GUniFrac	1
argusDS.apc.utils	3
RcmdrMisc	2
readstata13	1
worrms	2
bayesm	6
forestplot	1
argusDS.TradingSignals	1
airr	1
keggsvg	0
riskmetric	1
appgen	1
intergraph	1
gWidgets	0
ompr	1
ompr.roi	1
cosmosR	1
clustree	2
distr6	1
param6	1
set6	1
geojsonio	1
catboost	1
mcr	8
extraChIPs	0
dorothea	1
tidyterra	1
muscat	1
structToolbox	1
logger	22
TTR	7
rMisbeta	2
rentrez	1
CLIFF	1
SimDesign	2
multicool	9
EBImage	1
DiceDesign	5
FragPipeAnalystR	1
DatabaseConnector	1
bigmemory	3
teal	2
fgsea	1
ggbreak	0
Rchoice	0
disk.frame	0
rlemon	0
pkgKitten	1
proffer	1
tinytest	0
ttdo	0
mitml	0
ngsReports	0
lokern	1
seqmagick	2
affy	1
mia	1
MuMIn	2
D2C	1
ChemmineOB	0
cgdsr	0
CMplot	0
ROI.plugin.lpsolve	1
pmplots	1
SuperLearner	1
transport	1
NEONiso	0
blockmodeling	1
bench	0
archive	2
mpn.scorecard	1
officedown	2
argus.DS.Credentials	3
spicyworkflow	0
expressionnormalizationworkflow	0
chipseqdb	0
geomxworkflows	0
liftover	0
methylationarrayanalysis	0
rnaseq123	0
SingleR	1
JADE	1
BiocBaseUtils	1
limSolve	1
corpora	0
scda.2021	0
pcalg	1
MSstats	1
argusDS.Studio.permissions	3
ChAMP	0
skmeans	1
gfonts	1
AlgDesign	3
CBPS	1
uchardet	1
RCy3	0
ggalluvial	1
ggVennDiagram	3
maboost	1
RankAggreg	1
poorman	2
splitTools	1
mlbench	2
mlr3proba	1
Publish	1
NanoPyx	0
slingshot	0
MetaboAnalystR	0
fakepackage	1
lastdose	1
rpsftm	1
vars	1
spacrt	1
contentid	3
snowfall	1
tgp	1
dastools	1
BIAutils	1
RVAideMemoire	1
wheatmap	1
getip	2
biocViews	1
gwasrapidd	1
DEXSeq	0
scRNASeq.spatial	0
plantecophys	0
wikitaxa	0
qrnn	1
fauxpas	0
consort	1
rcartocolor	0
sas7bdat	1
doFuture	1
CytoTRACE	1
CNEr	1
bambu	0
Rcgmin	1
R.devices	1
rgexf	1
PKPDmodels	1
here	1
AnnotationForge	1
densvis	1
odyproteomicsValidator	0
vendormetadatahelpers	0
EpiStats	0
mFilter	0
findpython	1
groupdata2	1
PullReadAnalysisData	0
nonnest2	1
campsis	0
listviewer	1
ExplorOMICS	1
utilsRmd	1
secrets	1
RIPSeeker	0
leaps	10
psychTools	1
dplyrb	0
rdflib	1
sva	1
mlfa	0
clusterSim	1
skimr	2
highlight	0
covRNA	0
DECIPHER	1
complexheatmap	0
multiGSEA	1
candisc	1
smacof	1
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