===============================
R CMD BUILD
===============================
* checking for file MPAC/DESCRIPTION ... OK
* preparing MPAC:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* building MPAC_0.99.7.tar.gz
===============================
BiocCheckGitClone('MPAC')
===============================
BiocCheckVersion: 1.39.27
BiocVersion: 3.19
Package: MPAC
PackageVersion: 0.99.7
sourceDir: /home/pkgbuild/packagebuilder/workers/jobs/3329/1c203cd32898fedd7ca1e1ff1ac7f4224a27515f/MPAC
platform: unix
isTarBall: FALSE
* Checking valid files...
* Checking for stray BiocCheck output folders...
* Checking for inst/doc folders...
* Checking DESCRIPTION...
* Checking if DESCRIPTION is well formatted...
* Checking for valid maintainer...
* Checking CITATION...
* Checking that provided CITATION file is correctly formatted...
BiocCheck results
0 ERRORS | 0 WARNINGS | 0 NOTES
For more details, run
browseVignettes(package = 'BiocCheck')
===============================
R CMD CHECK
===============================
* using log directory /home/pkgbuild/packagebuilder/workers/jobs/3329/1c203cd32898fedd7ca1e1ff1ac7f4224a27515f/MPAC.Rcheck
* using R Under development (unstable) (2024-03-18 r86148)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* using option --no-vignettes
* checking for file MPAC/DESCRIPTION ... OK
* this is package MPAC version 0.99.7
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package MPAC can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking build directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [9s/9s] OK
* checking whether the package can be loaded with stated dependencies ... [9s/9s] OK
* checking whether the package can be unloaded cleanly ... [9s/9s] OK
* checking whether the namespace can be loaded with stated dependencies ... [9s/9s] OK
* checking whether the namespace can be unloaded cleanly ... [9s/9s] OK
* checking loading without being on the library search path ... [9s/9s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [33s/33s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in vignettes ... OK
* checking examples ... [31s/31s] OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
Running testthat.R [20s/20s]
[20s/20s] ERROR
Running the tests in tests/testthat.R failed.
Last 20 lines of output:
[ FAIL 3 | WARN 1 | SKIP 0 | PASS 26 ]
Failed tests
Failure ('test-conMtf.R:22:9'): testConMtf: 1
igraph::identical_graphs(outl[[ind]], cmpl[[ind]]) (`actual`) not identical to TRUE (`expected`).
`actual`: FALSE
`expected`: TRUE
Failure ('test-subNtw.R:22:9'): testSubNtw
identical_graphs(outl[[pat]], cmpl[[pat]]) (`actual`) not identical to TRUE (`expected`).
`actual`: FALSE
`expected`: TRUE
Failure ('test-subNtw.R:22:9'): testSubNtw
identical_graphs(outl[[pat]], cmpl[[pat]]) (`actual`) not identical to TRUE (`expected`).
`actual`: FALSE
`expected`: TRUE
[ FAIL 3 | WARN 1 | SKIP 0 | PASS 26 ]
Error: Test failures
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... [3s/3s] OK
* DONE
Status: 1 ERROR
See
/home/pkgbuild/packagebuilder/workers/jobs/3329/1c203cd32898fedd7ca1e1ff1ac7f4224a27515f/MPAC.Rcheck/00check.log
for details.
===============================
BiocCheck('MPAC_0.99.7.tar.gz')
===============================
BiocCheckVersion: 1.39.27
BiocVersion: 3.19
Package: MPAC
PackageVersion: 0.99.7
sourceDir: /tmp/RtmpKKh4ac/file2778fc332c188c/MPAC
installDir: /tmp/RtmpKKh4ac/file2778fc7f31550
BiocCheckDir: /home/pkgbuild/packagebuilder/workers/jobs/3329/1c203cd32898fedd7ca1e1ff1ac7f4224a27515f/MPAC.BiocCheck
platform: unix
isTarBall: TRUE
* Installing package...
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking new package version number...
* Checking R version dependency...
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
* Checking build system compatibility...
* Checking for blank lines in DESCRIPTION...
* Checking if DESCRIPTION is well formatted...
* Checking for proper Description: field...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches directory/tarball name...
* Checking for Version: field...
* Checking for valid maintainer...
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
* Checking for Bioconductor software dependencies...
Bioconductor dependencies found in Imports & Depends (64%).
* Checking for pinned package versions in DESCRIPTION...
* Checking DESCRIPTION/NAMESPACE consistency...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
* Checking whether vignette is built with 'R CMD build'...
* Checking package installation calls in R code...
* Checking for library/require of MPAC...
* Checking coding practice...
* Checking parsed R code in R directory, examples, vignettes...
* Checking function lengths...
* Checking man page documentation...
* Checking package NEWS...
* Checking unit tests...
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source,
and vignette source...
* Checking if package already exists in CRAN...
* Checking if new package already exists in Bioconductor...
* Checking for bioc-devel mailing list subscription...
* ERROR: Subscribe to the Bioc-devel mailing list by going to
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
Maintainer is registered at support site.
Package is in the Support Site Watched Tags.
BiocCheck results
1 ERRORS | 0 WARNINGS | 0 NOTES
See the MPAC.BiocCheck folder and run
browseVignettes(package = 'BiocCheck')
for details.