CHANGES IN VERSION 1.33.2 ------------------------- o Fixed BiocCheck ERRORs/WARNINGs: replaced Author/Maintainer fields with Authors@R [cre], added \value to enableMotifLogoPopups man page, fixed class() == check to use is(). o Updated genomeSpec URL from deprecated S3 bucket to https://igv.org/genomes/genomes.json. o Added MotifDb:: and seqLogo:: namespace qualifiers to resolve 'no visible binding' NOTEs. o Replaced full MIT LICENSE text with DCF stub (YEAR/COPYRIGHT HOLDER). o Added GitHub Actions CI workflow (R-CMD-check-bioc, Bioc 3.22, R 4.5). o Added Podman-based local CI (Containerfile, run_local_ci.R, make targets). o Resolved all lintr violations in R/ and vignettes/ (1752 infix_spaces and line_length issues). CHANGES IN VERSION 1.33.1 ------------------------- o Added CramTrack.R to Collate field in DESCRIPTION to fix build error. CHANGES IN VERSION 1.33.0 ------------------------- o Version bump due to Bioconductor 3.23 devel synchronization. CHANGES IN VERSION 1.31.1 NEW FEATURES o Added `CramTrack` class to support visualization of CRAM alignment files. o Updated internal JavaScript dispatch to explicitly handle `format: "cram"`, fixing an issue where CRAM files were incorrectly parsed as BAM (GitHub Issue #40). CHANGES IN VERSION 1.6 ----------------------- NEW FEATURES o bam (Alignment) tracks now supported o Motif logos now displayed by clicking on appropriately configured tracks o pkgdown website (vignettes and man pages) at https://paul-shannon.github.io/igvR/index.html o more genomes supported: hg38, hg19, hg18, mm10, bostau8, canfam3, ce11, danrer10, danrer11, dm6, gorgor4, panpan2, pantro4, pfal3d7, rn6, saccer3, susscr11, tair10 o R commands sent to the browser now return only when the Javascript command completes o built with version 2.3.2 of igv.js