Changes in version 2.7.1                        

  - Windowed / streaming VCF distance and tree output. Emit one distance
    matrix (or Newick tree) per genomic window of N base pairs or per N
    consecutive variants for VCF2DIST and VCF2TREE.

                 Changes in version 2.5.0 (2026-02-02)                  

  - Added embedding-based distance calculation for VCF files
    (backend 2.5.0).

                 Changes in version 2.3.0 (2025-12-01)                  

  - Implement reading compressed VCF input (gz, bzip2, xz).

                 Changes in version 2.2.0 (2025-11-01)                  

  - Major update: enhanced streaming, faster bootstrapping, and backend
    v2.2.0 integration.

                 Changes in version 2.0.0 (2025-10-29)                  

  - Implements streaming bootstrap; from VCF to newick with support
    values.
  - Streaming ultra-fast VCF processing; almost zero RAM needed.
  - Update backend (2.2.0) and CLI. Preparing for major version upgrade.

                 Changes in version 1.99.0 (2025-05-29)                 

  - Update backend and CLI. Preparing for major version upgrade.

                Changes in version 1.13.30 (2025-05-18)                 

  - Update backend and CLI.

                Changes in version 1.13.29 (2025-05-18)                 

  - Update backend and CLI.

                Changes in version 1.13.27 (2025-05-17)                 

  - Update backend and CLI.

                Changes in version 1.13.26 (2025-05-16)                 

  - Update backend and CLI.

                Changes in version 1.13.25 (2025-05-16)                 

  - Update backend and CLI.

                Changes in version 1.13.24 (2025-05-16)                 

  - Update backend and CLI.

                Changes in version 1.13.23 (2025-05-16)                 

  - Update backend and CLI.

                Changes in version 1.13.22 (2025-05-16)                 

  - Update backend and CLI.

                Changes in version 1.13.21 (2025-05-16)                 

  - Update backend and CLI.

                Changes in version 1.13.20 (2025-05-14)                 

  - Update backend and CLI.

                Changes in version 1.13.19 (2025-05-14)                 

  - Update backend and CLI.

                 Changes in version 1.13.1 (2025-04-11)                 

  - Update backend and CLI.

                 Changes in version 1.7.3 (2024-04-07)                  

  - Preparing for next Bioconductor Release.

                 Changes in version 1.7.2 (2024-02-10)                  

  - Fix vignette bug.

                 Changes in version 1.7.1 (2024-02-10)                  

  - Update R version requirement.

                 Changes in version 1.5.2 (2023-08-24)                  

  - Update java backend to BioInfoJavaUtils-1.4.0 (haploid GT in vcf).

                 Changes in version 1.5.1 (2023-04-30)                  

  - Update java backend to BioInfoJavaUtils-1.3.1 (fasta header name).

                 Changes in version 1.1.6 (2022-09-26)                  

  - Update java backend to BioInfoJavaUtils-1.2.4 (revamped
    FastaManager).

                 Changes in version 1.1.5 (2022-06-23)                  

  - Update vignette minor bug.

                 Changes in version 1.1.4 (2022-06-16)                  

  - Update vignette to handle getting sample files through https
    failure.

                 Changes in version 1.1.3 (2022-06-06)                  

  - Update vignette to handle getting sample files through https
    failure.

                 Changes in version 1.1.2 (2022-05-15)                  

  - Update possibly corrupted samples.vcf.gz.

                 Changes in version 1.1.1 (2022-05-08)                  

  - Update tests to improve coverage.

                 Changes in version 1.0.0 (2022-04-27)                  

  - Bioconductor 3.15 Release. New package fastreeR, Phylogenetic,
    Distance and Other Calculations on VCF and Fasta Files.

                 Changes in version 0.99.7 (2022-04-02)                 

  - Updates and corrections after the 1st Bioconductor review.

                 Changes in version 0.99.6 (2022-03-26)                 

  - Drop function dist2hist.

                 Changes in version 0.99.5 (2022-03-25)                 

  - Update vignette's use of dist2hist.

                 Changes in version 0.99.4 (2022-03-25)                 

  - Update java backend (createHistogram).

                 Changes in version 0.99.3 (2022-03-25)                 

  - Update java backend.

                 Changes in version 0.99.2 (2022-03-25)                 

  - Update README.md to inform about JDK>=8 requirement.
  - Update java dependencies (jfreechart-1.5.3).

                 Changes in version 0.99.1 (2022-03-24)                 

  - Update vignette to use BiocFileCache so that sample vcf and fasta
    downloads not get repeated needlessly.

                 Changes in version 0.99.0 (2022-03-21)                 

  - Submitted to Bioconductor.