Changes in version 2.31.1 - get_rel_df() to access ontology relation data frame required by the Wang method (2024-08-13, Tue) - a set of 'OntDb' methods for accessing sqlite data generated by the 'obolite' package (2024-08-13, Tue) - use yulab.utils::yulab_msg() for startup message (2024-07-26, Fri) Changes in version 2.30.0 - Bioconductor RELEASE_3_19 (2024-05-15, Wed) Changes in version 2.29.2 - update buildGOmap() parameter to consistent with enricher() and GSEA() (2024-02-06, Tue, #47) Changes in version 2.29.1 - extend godata() to support passing a data.frame (can be output of read.gaf() or read.blast2go()) to 'annoDb' (2023-01-16, Tue) - deprecate 'OrgDb' and introduce new parameter 'annoDb' in godata() - standardize the output of read.gaf() and read.blast2go() - optimize buildGOmap() Changes in version 2.28.0 - Bioconductor RELEASE_3_18 (2023-10-25, Wed) Changes in version 2.27.3 - use check_installed() to check package dependency (2023-09-12, Tue, #43) Changes in version 2.27.2 - read.blast2go() to parse 'blast2go' result (2023-07-10, Mon, #41, #42) - move buildGOmap() and read.gaf() from 'clusterProfiler' (2023-07-10, Mon) Changes in version 2.27.1 - semantic similarity measurement support for MPO (2023-04-06, Thu) - TCSS semantic similarity measurement support for DO and MPO (2023-04-06, Thu) Changes in version 2.26.0 - Bioconductor RELEASE_3_17 (2023-05-03, Wed) Changes in version 2.24.0 - Bioconductor RELEASE_3_16 (2022-11-02, Wed) Changes in version 2.23.1 - Replacing DO.db with HDO.db (2022-07-29, Mon) Changes in version 2.22.0 - Bioconductor 3.15 release Changes in version 2.21.1 - Avoid eval-parse in load_OrgDb() (2022-01-10, Mon) Changes in version 2.20 - Bioconductor 3.14 release Changes in version 2.19.1 - TCSS method (@qibaiqi, #35; 2021-08-02, Mon) Changes in version 2.18.0 - Bioconductor 3.13 release Changes in version 2.17.1 - bug fixed according to the update of GO.db (2020-10-29, Thu) - https://github.com/YuLab-SMU/GOSemSim/issues/32 Changes in version 2.16.0 - Bioconductor 3.12 release (2020-10-28, Wed) Changes in version 2.15.2 - new site, https://yulab-smu.top/biomedical-knowledge-mining-book/ for documentation (2020-09-04, Fri) - update vignette - update data/gotbl Changes in version 2.15.1 - bug fixed of IC method when input IDs contain invalid terms. (2020-07-25, Sat) Changes in version 2.14.0 - Bioconductor 3.11 release Changes in version 2.13.1 - add new citation (2020-03-19, Thu) - fixed compiling error due to the change of Rcpp - https://github.com/YuLab-SMU/GOSemSim/issues/27 Changes in version 2.7.1 - mgeneSim and mclusterSim now always return matrix (2018-08-08, Wed) - https://www.biostars.org/p/330642/#331598 Changes in version 2.5.1 - return NA for deprecated IDs (2018-01-09, Fri) - https://support.bioconductor.org/p/105822/#105840