Changes in version 0.99.4 (2026-03-17)                 

  - Added local_offset_distance_with_background_fast function which uses
    dbscan for faster neighour finding.

  - denoist() now defaults to fast neighbour finding via the
    neighbour_mode option.

  - Fixed minor bug where background offset cannot be calculated because
    an entire gene gets filtered out because of low qv. This should not
    change existing usage as the issue only arises in extremely small
    toy datasets.

  - n_inits can now be tuned in the denoist() function for speed.

                 Changes in version 0.99.3 (2026-02-24)                 

  - Removed print from README.

  - Fixed minor bug where background offset cannot be calculated because
    an entire gene gets filtered out because of low qv.

  - n_inits can now be tuned in the denoist() function for speed.

                 Changes in version 0.99.2 (2026-02-05)                 

  - Removed commented out chunks during development.

  - Added verbose option to make progress messages off by default.

  - Replaced dplyr, tidyr, and tibble dependency with base R xtabs.

  - Specified functions imported from flexmix instead of importing the
    whole package.

  - Updated vignette to use BiocStyle.

  - Trimmed README content for a more pleasant reading experience.

  - Vignette now uses an even smaller dataset.

                 Changes in version 0.99.1 (2026-01-19)                 

  - local_offset_distance_with_background can now handle non-Xenium
    transcript data with no QV column without data modification from
    user.

                 Changes in version 0.99.0 (2025-12-01)                 

  - Submitted to Bioconductor