singIST
This is the development version of singIST; to use it, please install the devel version of Bioconductor.
comparative single-cell transcriptomics between disease models and a human condition
Bioconductor version: Development (3.23)
Provides with toolkits to implement a full singIST analysis with pseudobulked Seurat objects of disease models and human data.
Author: Aitor Moruno-Cuenca [aut, cre]
, Dr. Sergio Picart-Armada [rev]
, Dr. Alexandre Perera-Lluna [ths]
, Dr. Francesc Fernández-Albert [ths]
Maintainer: Aitor Moruno-Cuenca <morunoaitor at gmail.com>
citation("singIST")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("singIST")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("singIST")| singIST Vignette | HTML | R Script |
| Reference Manual |
Details
| biocViews | Classification, SingleCell, Software, Transcriptomics |
| Version | 0.99.85 |
| In Bioconductor since | BioC 3.23 (R-4.6) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.6.0) |
| Imports | msigdb, GSEABase, checkmate, stats, asmbPLS, BiocParallel, stringr, FactoMineR, Seurat, SeuratObject, biomaRt, data.table, purrr, SingleCellExperiment, SummarizedExperiment, scran, scuttle, missMDA, S4Vectors |
| System Requirements | |
| URL | https://github.com/DataScienceRD-Almirall/singIST |
| Bug Reports | https://github.com/DataScienceRD-Almirall/singIST/issues |
See More
| Suggests | testthat (>= 3.0.0), BiocStyle, knitr, qpdf, utils, RcppAlgos, glmGamPoi, methods, sp |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | singIST_0.99.85.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/singIST |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/singIST |
| Bioc Package Browser | https://code.bioconductor.org/browse/singIST/ |
| Package Short Url | https://bioconductor.org/packages/singIST/ |
| Package Downloads Report | Download Stats |