drugfindR
This is the development version of drugfindR; to use it, please install the devel version of Bioconductor.
Investigate iLINCS for candidate repurposable drugs
Bioconductor version: Development (3.23)
This package provides a convenient way to access the LINCS Signatures available in the iLINCS database. These signatures include Consensus Gene Knockdown Signatures, Gene Overexpression signatures and Chemical Perturbagen Signatures. It also provides a way to enter your own transcriptomic signatures and identify concordant and discordant signatures in the LINCS database.
Author: Ali Sajid Imami [aut, cre]
, Smita Sahay [aut]
, Justin Fortune Creeden [aut]
, Robert Erne McCullumsmith [ctb, fnd]
Maintainer: Ali Sajid Imami <Ali.Sajid.Imami at gmail.com>
citation("drugfindR")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("drugfindR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("drugfindR")| drugfindR | HTML | R Script |
| Reference Manual |
Details
| biocViews | DifferentialExpression, FunctionalPrediction, GeneSetEnrichment, Network, SingleCell, Software |
| Version | 0.99.1349 |
| In Bioconductor since | BioC 3.23 (R-4.6) |
| License | GPL-3 + file LICENSE |
| Depends | R (>= 4.5.0) |
| Imports | tibble, rlang, dplyr, purrr, readr, stringr, stats, lifecycle, S4Vectors, httr2, curl, DFplyr |
| System Requirements | |
| URL | https://github.com/CogDisResLab/drugfindR https://cogdisreslab.github.io/drugfindR/ |
| Bug Reports | https://github.com/CogDisResLab/drugfindR/issues |
See More
| Suggests | AnnotationDbi, BiocStyle, biocthis, codemetar, devtools, here, httptest2, jsonlite, knitr, rmarkdown, testthat (>= 3.0.0), tidyverse, usethis |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
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| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | drugfindR_0.99.1349.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | drugfindR_0.99.1349.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/drugfindR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/drugfindR |
| Bioc Package Browser | https://code.bioconductor.org/browse/drugfindR/ |
| Package Short Url | https://bioconductor.org/packages/drugfindR/ |
| Package Downloads Report | Download Stats |