BiocBuildReporter
This is the development version of BiocBuildReporter; to use it, please install the devel version of Bioconductor.
Functions to process a bioconductor build report database
Bioconductor version: Development (3.23)
This package reads remote parquet files that have processed Bioconductor build report logs. Users may query the tables directly for specific information or use pre-defined helper functions for common queries. The logs processed are from https://bioconductor.org/checkResults/. In the future we will extend this package out to include processing of r-universe logs.
Author: Sean Davis [aut], Lori Shepherd [aut, cre]
Maintainer: Lori Shepherd <lori.shepherd at roswellpark.org>
citation("BiocBuildReporter")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("BiocBuildReporter")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BiocBuildReporter")| BiocBuildReporter Data Use Cases | HTML | R Script |
| Reference Manual |
Details
| biocViews | Infrastructure, Software |
| Version | 0.99.2 |
| In Bioconductor since | BioC 3.23 (R-4.6) |
| License | Apache License (>= 2) |
| Depends | R (>= 4.6.0) |
| Imports | arrow, dplyr, BiocFileCache |
| System Requirements | |
| URL | https://github.com/lshep/BiocBuildReporter.git |
| Bug Reports | https://github.com/lshep/BiocBuildReporter/issues |
See More
| Suggests | BiocStyle, testthat (>= 3.0.0), knitr, rmarkdown, ggplot2, tidyr, stringr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | BiocBuildReporter_0.99.2.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (big-sur-arm64) | BiocBuildReporter_0.99.2.tgz |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/BiocBuildReporter |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BiocBuildReporter |
| Bioc Package Browser | https://code.bioconductor.org/browse/BiocBuildReporter/ |
| Package Short Url | https://bioconductor.org/packages/BiocBuildReporter/ |
| Package Downloads Report | Download Stats |