Comprehensive Liquid Chromatography-Mass Spectrometry (LC-MS) data visualisation package

Documentation for package ‘lcmsPlot’ version 0.99.16

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lcmsPlot-package	lcmsPlot: Comprehensive Liquid Chromatography-Mass Spectrometry (LC-MS) data visualisation package
+-method	Apply a function to an 'lcmsPlotClass' object using the infix '+' operator
ExternalDataSource-class	External data source wrapper
get_XCMSnExp_object_example	Get an 'XCMSnExp' example object from the 'faahKO' dataset
iterate_plot_batches	Iterate on the batches of plots
iterate_plot_batches-method	Iterate on the batches of plots
lcmsPlot	Create an 'lcmsPlotClass' object
lcmsPlotClass-class	Managing LC-MS data for visualisation
lcmsPlotDataContainer-class	A unified storing mechanism for LC-MS data
lp_arrange	Define the arrangement of chromatograms
lp_chromatogram	Define the chromatograms to plot
lp_compound_discoverer	Define the options to use when plotting LC-MS data coming from Compound Discoverer results.
lp_facets	Define the plot's faceting
lp_get_plot	Get the underlying plot object.
lp_grid	Define a gridded plot
lp_intensity_map	Define a 2D intensity map
lp_labels	Define the labels of the plot
lp_layout	Define the plot layout
lp_legend	Define the legend layout
lp_mass_trace	Define the mass trace to plot
lp_rt_diff_plot	Generate the retention time difference plot between raw and adjusted datasets
lp_rt_line	Define a vertical line on a retention time value
lp_spectra	Define the spectra to plot
lp_total_ion_current	Define the total ion current (TIC)
MsDialPeaksSource	Create an MS-DIAL data source from peak lists
MZmineFeatureListsSource	Create an MZmine data source from feature lists
next_plot	Move to the next plot object (batch-mode)
next_plot-method	Move to the next plot object (batch-mode)
show-method	Show a summary of an instance of class 'ExternalDataSource'
show-method	Plot the 'lcmsPlotClass' object
show-method	Show a summary of an instance of class 'lcmsPlotDataContainer'