davidTiling
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see davidTiling.
Data and analysis scripts for David, Huber et al. yeast tiling array paper
Bioconductor version: 3.9
This package contains the data for the paper by L. David et al. in PNAS 2006 (PMID 16569694): 8 CEL files of Affymetrix genechips, an ExpressionSet object with the raw feature data, a probe annotation data structure for the chip and the yeast genome annotation (GFF file) that was used. In addition, some custom-written analysis functions are provided, as well as R scripts in the scripts directory.
Author: Wolfgang Huber <huber at ebi.ac.uk>, Joern Toedling <toedling at ebi.ac.uk>
Maintainer: Wolfgang Huber <huber at ebi.ac.uk>
citation("davidTiling")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("davidTiling")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | ExperimentData, Genome, MicroarrayData, ReproducibleResearch, Saccharomyces_cerevisiae_Data |
| Version | 1.24.0 |
| License | LGPL |
| Depends | R (>= 2.10), Biobase(>= 2.5.5), tilingArray, GO.db |
| Imports | |
| System Requirements | |
| URL | http://www.ebi.ac.uk/huber |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | davidTiling_1.24.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Source Repository | git clone https://git.bioconductor.org/packages/davidTiling |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/davidTiling |
| Package Short Url | https://bioconductor.org/packages/davidTiling/ |
| Package Downloads Report | Download Stats |