bodymapRat
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see bodymapRat.
Experimental dataset from the rat BodyMap project
Bioconductor version: 3.9
This package contains a SummarizedExperiment from the Yu et al. (2013) paper that performed the rat BodyMap across 11 organs and 4 developmental stages. Raw FASTQ files were downloaded and mapped using STAR. Data is available on ExperimentHub as a data package.
Author: Stephanie Hicks [aut, cre] 
, Kwame Okrah [aut]
Maintainer: Stephanie Hicks <shicks19 at jhu.edu>
citation("bodymapRat")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("bodymapRat")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("bodymapRat")| The bodymapRat data user's guide | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ExperimentData, ExperimentHub, ExpressionData, RNASeqData, SequencingData |
| Version | 1.0.0 |
| License | CC BY 4.0 |
| Depends | R (>= 3.6.0), SummarizedExperiment, ExperimentHub |
| Imports | utils |
| System Requirements | |
| URL |
See More
| Suggests | knitr, BiocStyle, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | qsmooth |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | bodymapRat_1.0.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Source Repository | git clone https://git.bioconductor.org/packages/bodymapRat |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/bodymapRat |
| Package Short Url | https://bioconductor.org/packages/bodymapRat/ |
| Package Downloads Report | Download Stats |