SomaticCancerAlterations
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see SomaticCancerAlterations.
Somatic Cancer Alterations
Bioconductor version: 3.9
Collection of somatic cancer alteration datasets
Author: Julian Gehring (EMBL Heidelberg)
Maintainer: Julian Gehring <jg-bioc at gmx.com>
Citation (from within R, enter
citation("SomaticCancerAlterations")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SomaticCancerAlterations")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SomaticCancerAlterations")| SomaticCancerAlterations - HTML | HTML | R Script |
| Reference Manual |
Details
| biocViews | CancerData, ExperimentData, Genome, NCI, Project1000genomes |
| Version | 1.20.0 |
| License | GPL-3 |
| Depends | R (>= 3.0.0) |
| Imports | GenomicRanges, exomeCopy, stringr, IRanges, S4Vectors |
| System Requirements | |
| URL |
See More
| Suggests | testthat, ggbio, ggplot2, knitr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | SomaticSignatures |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | SomaticCancerAlterations_1.20.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Source Repository | git clone https://git.bioconductor.org/packages/SomaticCancerAlterations |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SomaticCancerAlterations |
| Package Short Url | https://bioconductor.org/packages/SomaticCancerAlterations/ |
| Package Downloads Report | Download Stats |