LungCancerLines
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see LungCancerLines.
Reads from Two Lung Cancer Cell Lines
Bioconductor version: 3.9
Reads from an RNA-seq experiment between two lung cancer cell lines: H1993 (met) and H2073 (primary). The reads are stored as Fastq files and are meant for use with the TP53Genome object in the gmapR package.
Author: Cory Barr, Michael Lawrence
Maintainer: Cory Barr <barr.cory at gene.com>
Citation (from within R, enter
citation("LungCancerLines")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("LungCancerLines")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | CancerData, ExperimentData, Genome, LungCancerData, RNASeqData |
| Version | 0.22.0 |
| License | Artistic-2.0 |
| Depends | |
| Imports | Rsamtools |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | gmapR, HTSeqGenie, VariantTools |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | LungCancerLines_0.22.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Source Repository | git clone https://git.bioconductor.org/packages/LungCancerLines |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/LungCancerLines |
| Package Short Url | https://bioconductor.org/packages/LungCancerLines/ |
| Package Downloads Report | Download Stats |