HarmonizedTCGAData
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see HarmonizedTCGAData.
Processed Harmonized TCGA Data of Five Selected Cancer Types
Bioconductor version: 3.9
This package contains the processed harmonized TCGA data of five cancer types used in "Tianle Ma and Aidong Zhang, Integrate Multi-omic Data Using Affinity Network Fusion (ANF) for Cancer Patient Clustering".
Author: Tianle Ma
Maintainer: Tianle Ma <tianlema at buffalo.edu>
citation("HarmonizedTCGAData")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("HarmonizedTCGAData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("HarmonizedTCGAData")| Patient Affinity Matrices Derived from Harmonized TCGA Dataset | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | CancerData, ExperimentData, ReproducibleResearch |
| Version | 1.6.0 |
| License | GPL-3 |
| Depends | R (>= 3.4.0) |
| Imports | ExperimentHub |
| System Requirements | |
| URL |
See More
| Suggests | AnnotationHub, knitr, rmarkdown, igraph, survival, ANF, stats, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | HarmonizedTCGAData_1.6.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Source Repository | git clone https://git.bioconductor.org/packages/HarmonizedTCGAData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/HarmonizedTCGAData |
| Package Short Url | https://bioconductor.org/packages/HarmonizedTCGAData/ |
| Package Downloads Report | Download Stats |