AshkenazimSonChr21
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see AshkenazimSonChr21.
Annotated variants on the chromosome 21, human genome 19, Ashkenazim Trio son sample
Bioconductor version: 3.9
SonVariantsChr21 is a dataset of annotated genomic variants coming from Complete Genomics whole genome sequencing. Data comes from GIAB project, Ashkenazim Trio, sample HG002 run 1. Both vcf and annotated data frame are provided.
Author: Tomasz Stokowy
Maintainer: Who to complain to <tomasz.stokowy at k2.uib.no>
citation("AshkenazimSonChr21")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("AshkenazimSonChr21")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("AshkenazimSonChr21")| RareVariantVis | R Script | |
| Reference Manual |
Details
| biocViews | ExperimentData, GenomicVariation, Sequencing, WholeGenome |
| Version | 1.14.0 |
| License | Artistic-2.0 |
| Depends | |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | knitr, VariantAnnotation |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | AshkenazimSonChr21_1.14.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Source Repository | git clone https://git.bioconductor.org/packages/AshkenazimSonChr21 |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/AshkenazimSonChr21 |
| Package Short Url | https://bioconductor.org/packages/AshkenazimSonChr21/ |
| Package Downloads Report | Download Stats |