Package Version 1.2.2 2015-10-07 09:42:28 EDT --- --- --- --- --- --- --- --- --- --- --- --- o upgraded to use the latest version (2.1.1) of `changepoint` Package Version 1.2.1 2015-10-05 14:10:48 EDT --- --- --- --- --- --- --- --- --- --- --- --- o fixed [DESCRIPTION] for dependent packages Package Version 0.99.2 2014-08-21 23:46:44 EDT --- --- --- --- --- --- --- --- --- --- --- --- o added url for devel version. o changed [NGScopy] `MoreArgs.segments` to `MoreArgs.plotsegm`. o changed [NGScopy] `MoreArgs.points` to `MoreArgs.plotcn`. o changed [NGScopy] `[_\.]seg*` to `[_\.]segm*`, code or file. o changed [NGScopy] `plot_cn` to `plot_out`. Package Version 0.99.1 2014-08-15 15:44:34 EDT --- --- --- --- --- --- --- --- --- --- --- --- o added [NGScopy] `force.rerun`. o added [NGScopy] `MoreArgs.cn`, `MoreArgs.seg`. o added [NGScopy] `dsN`, `dsT` for downsampling. o added [NGScopy] `parse_segtype`, `help_segtype`. o added [NGScopy] `segtype`, `calc_seg`, `proc_seg` for segmentation. o added [NGScopy] `read_regions`. o added [NGScopy] `regions` for targted analysis. Package Version 0.99.1 2014-07-10 15:48:27 EDT --- --- --- --- --- --- --- --- --- --- --- --- o fixed [ngscopy-internal.R | .count_starts] `return matrix (rbind) instead of vector (c)`. o fixed [ngscopy-internal.R | .count_starts] `duplicate row.names via c`. o added `force.run to proc_normal, proc_tumor, calc_cn, make_data`. NGScopy Version 0.99.0 2014-06-10 13:36:41 EDT --- --- --- --- --- --- --- --- --- --- --- --- o The initial release.