yaqcaffy
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see yaqcaffy.
Affymetrix expression data quality control and reproducibility analysis
Bioconductor version: 3.9
Quality control of Affymetrix GeneChip expression data and reproducibility analysis of human whole genome chips with the MAQC reference datasets.
Author: Laurent Gatto
Maintainer: Laurent Gatto <lg390 at cam.ac.uk>
citation("yaqcaffy")
):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("yaqcaffy")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("yaqcaffy")
yaqcaffy: Affymetrix quality control and MAQC reproducibility | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Microarray, OneChannel, QualityControl, ReportWriting, Software |
Version | 1.44.0 |
In Bioconductor since | BioC 2.2 (R-2.7) (16 years) |
License | Artistic-2.0 |
Depends | simpleaffy(>= 2.19.3), methods |
Imports | stats4 |
System Requirements | |
URL |
See More
Suggests | MAQCsubsetAFX, affydata, xtable, tcltk2, tcltk |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | qcmetrics |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | yaqcaffy_1.44.0.tar.gz |
Windows Binary | yaqcaffy_1.44.0.zip (32- & 64-bit) |
Mac OS X 10.11 (El Capitan) | yaqcaffy_1.44.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/yaqcaffy |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/yaqcaffy |
Bioc Package Browser | https://code.bioconductor.org/browse/yaqcaffy/ |
Package Short Url | https://bioconductor.org/packages/yaqcaffy/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.9 | Source Archive |