tenXplore
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see tenXplore.
ontological exploration of scRNA-seq of 1.3 million mouse neurons from 10x genomics
Bioconductor version: 3.9
Perform ontological exploration of scRNA-seq of 1.3 million mouse neurons from 10x genomics.
Author: Vince Carey
Maintainer: VJ Carey <stvjc at channing.harvard.edu>
Citation (from within R, enter
citation("tenXplore")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("tenXplore")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("tenXplore")| tenXplore: ontology for scRNA-seq, applied to 10x 1.3 million neurons | R Script | |
| Reference Manual |
Details
| biocViews | DimensionReduction, ImmunoOncology, PrincipalComponent, SingleCell, Software, Transcriptomics |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.6 (R-3.4) (6.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.4), shiny, restfulSE(>= 0.99.12) |
| Imports | methods, ontoProc(>= 0.99.7), SummarizedExperiment, AnnotationDbi, matrixStats, org.Mm.eg.db, stats, utils |
| System Requirements | |
| URL |
See More
| Suggests | org.Hs.eg.db, testthat, knitr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | tenXplore_1.6.0.tar.gz |
| Windows Binary | tenXplore_1.6.0.zip |
| Mac OS X 10.11 (El Capitan) | tenXplore_1.6.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/tenXplore |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/tenXplore |
| Bioc Package Browser | https://code.bioconductor.org/browse/tenXplore/ |
| Package Short Url | https://bioconductor.org/packages/tenXplore/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |