ssviz

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see ssviz.

A small RNA-seq visualizer and analysis toolkit


Bioconductor version: 3.9

Small RNA sequencing viewer

Author: Diana Low

Maintainer: Diana Low <lowdiana at gmail.com>

Citation (from within R, enter citation("ssviz")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ssviz")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ssviz")
ssviz PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Genetics, ImmunoOncology, MultipleComparison, RNASeq, Sequencing, Software, Visualization
Version 1.18.0
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License GPL-2
Depends R (>= 2.15.1), methods, Rsamtools, Biostrings, reshape, ggplot2, RColorBrewer, stats
Imports
System Requirements
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Suggests knitr
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ssviz_1.18.0.tar.gz
Windows Binary ssviz_1.18.0.zip
Mac OS X 10.11 (El Capitan) ssviz_1.18.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ssviz
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ssviz
Bioc Package Browser https://code.bioconductor.org/browse/ssviz/
Package Short Url https://bioconductor.org/packages/ssviz/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive