spotSegmentation
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see spotSegmentation.
Microarray Spot Segmentation and Gridding for Blocks of Microarray Spots
Bioconductor version: 3.9
Spot segmentation via model-based clustering and gridding for blocks within microarray slides, as described in Li et al, Robust Model-Based Segmentation of Microarray Images, Technical Report no. 473, Department of Statistics, University of Washington.
Author: Qunhua Li, Chris Fraley, Adrian Raftery Department of Statistics, University of Washington
Maintainer: Chris Fraley <fraley at stat.washington.edu>
citation("spotSegmentation")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("spotSegmentation")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | Microarray, Preprocessing, QualityControl, Software, TwoChannel |
| Version | 1.58.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 19 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.10), mclust |
| Imports | |
| System Requirements | |
| URL | http://www.stat.washington.edu/fraley |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | spotSegmentation_1.58.0.tar.gz |
| Windows Binary | spotSegmentation_1.58.0.zip |
| Mac OS X 10.11 (El Capitan) | spotSegmentation_1.58.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/spotSegmentation |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/spotSegmentation |
| Bioc Package Browser | https://code.bioconductor.org/browse/spotSegmentation/ |
| Package Short Url | https://bioconductor.org/packages/spotSegmentation/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |