spliceSites
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see spliceSites.
A bioconductor package for exploration of alignment gap positions from RNA-seq data
Bioconductor version: 3.9
Performs splice centered analysis on RNA-seq data.
Author: Wolfgang Kaisers
Maintainer: Wolfgang Kaisers <kaisers at med.uni-duesseldorf.de>
Citation (from within R, enter
citation("spliceSites")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("spliceSites")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("spliceSites")| spliceSites | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DifferentialExpression, GeneExpression, Proteomics, RNAseq, Software |
| Version | 1.31.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (10.5 years) |
| License | GPL-2 |
| Depends | methods, rbamtools (>= 2.14.3), refGenome (>= 1.6.0), Biobase, Biostrings(>= 2.28.0) |
| Imports | BiocGenerics, doBy, seqLogo, IRanges |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | spliceSites_1.31.0.tar.gz |
| Windows Binary | spliceSites_1.31.0.zip |
| Mac OS X 10.11 (El Capitan) | spliceSites_1.31.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/spliceSites |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/spliceSites |
| Bioc Package Browser | https://code.bioconductor.org/browse/spliceSites/ |
| Package Short Url | https://bioconductor.org/packages/spliceSites/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |