shinyMethyl
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see shinyMethyl.
Interactive visualization for Illumina methylation arrays
Bioconductor version: 3.9
Interactive tool for visualizing Illumina methylation array data. Both the 450k and EPIC array are supported.
Author: Jean-Philippe Fortin [cre, aut], Kasper Daniel Hansen [aut]
Maintainer: Jean-Philippe Fortin <jfortin at jhsph.edu>
Citation (from within R, enter
citation("shinyMethyl")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("shinyMethyl")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("shinyMethyl")| shinyMethyl: interactive visualization of Illumina 450K methylation arrays | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DNAMethylation, Microarray, Preprocessing, QualityControl, Software, TwoChannel |
| Version | 1.20.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (9.5 years) |
| License | Artistic-2.0 |
| Depends | methods, BiocGenerics(>= 0.3.2), shiny (>= 0.13.2), minfi(>= 1.18.2), IlluminaHumanMethylation450kmanifest, matrixStats, R (>= 3.0.0) |
| Imports | RColorBrewer |
| System Requirements | |
| URL |
See More
| Suggests | shinyMethylData, minfiData, BiocStyle, RUnit, digest, knitr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | shinyMethyl_1.20.0.tar.gz |
| Windows Binary | shinyMethyl_1.20.0.zip |
| Mac OS X 10.11 (El Capitan) | shinyMethyl_1.20.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/shinyMethyl |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/shinyMethyl |
| Bioc Package Browser | https://code.bioconductor.org/browse/shinyMethyl/ |
| Package Short Url | https://bioconductor.org/packages/shinyMethyl/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |