runibic
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see runibic.
runibic: row-based biclustering algorithm for analysis of gene expression data in R
Bioconductor version: 3.9
This package implements UbiBic algorithm in R. This biclustering algorithm for analysis of gene expression data was introduced by Zhenjia Wang et al. in 2016. It is currently considered the most promising biclustering method for identification of meaningful structures in complex and noisy data.
Author: Patryk Orzechowski, Artur Pańszczyk
Maintainer: Patryk Orzechowski <patryk.orzechowski at gmail.com>
citation("runibic")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("runibic")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("runibic")| runibic: UniBic in R Tutorial | HTML |
| Reference Manual | |
| NEWS | Text |
| LICENSE | Text |
Details
| biocViews | Clustering, Coverage, GeneExpression, Microarray, Sequencing, Software |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.6 (R-3.4) (6.5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 3.4.0), biclust, SummarizedExperiment |
| Imports | Rcpp (>= 0.12.12), testthat, methods |
| System Requirements | C++11, GNU make |
| URL | http://github.com/athril/runibic |
| Bug Reports | http://github.com/athril/runibic/issues |
See More
| Suggests | knitr, rmarkdown, GEOquery, affy, airway, QUBIC |
| Linking To | Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | miRSM |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | runibic_1.6.0.tar.gz |
| Windows Binary | runibic_1.6.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | runibic_1.6.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/runibic |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/runibic |
| Bioc Package Browser | https://code.bioconductor.org/browse/runibic/ |
| Package Short Url | https://bioconductor.org/packages/runibic/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |