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rqubic

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see rqubic.

Qualitative biclustering algorithm for expression data analysis in R


Bioconductor version: 3.9

This package implements the QUBIC algorithm introduced by Li et al. for the qualitative biclustering with gene expression data.

Author: Jitao David Zhang, with inputs from Laura Badi and Martin Ebeling

Maintainer: Jitao David Zhang <jitao_david.zhang at roche.com>

Citation (from within R, enter citation("rqubic")):

Installation

To install this package, start R (version "3.6") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rqubic")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rqubic")
Qualitative Biclustering with Bioconductor Package rqubic PDF R Script
Reference Manual PDF
NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Clustering, Microarray, Software
Version 1.30.0
In Bioconductor since BioC 2.9 (R-2.14) (12.5 years)
License GPL-2
Depends
Imports methods, Biobase, BiocGenerics, biclust
System Requirements
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Suggests RColorBrewer
Linking To
Enhances
Depends On Me
Imports Me miRSM
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rqubic_1.30.0.tar.gz
Windows Binary rqubic_1.30.0.zip
Mac OS X 10.11 (El Capitan) rqubic_1.30.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/rqubic
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rqubic
Bioc Package Browser https://code.bioconductor.org/browse/rqubic/
Package Short Url https://bioconductor.org/packages/rqubic/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive