rnaSeqMap
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see rnaSeqMap.
rnaSeq secondary analyses
Bioconductor version: 3.9
The rnaSeqMap library provides classes and functions to analyze the RNA-sequencing data using the coverage profiles in multiple samples at a time
Author: Anna Lesniewska <alesniewska at cs.put.poznan.pl>; Michal Okoniewski <michal at fgcz.ethz.ch>
Maintainer: Michal Okoniewski <michal at fgcz.ethz.ch>
citation("rnaSeqMap")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("rnaSeqMap")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("rnaSeqMap")| rnaSeqMap primer | R Script | |
| Reference Manual |
Details
| biocViews | Annotation, DifferentialExpression, GeneExpression, ImmunoOncology, RNASeq, ReportWriting, SAGE, Sequencing, Software, Transcription, Visualization |
| Version | 2.42.0 |
| In Bioconductor since | BioC 2.7 (R-2.12) (13.5 years) |
| License | GPL-2 |
| Depends | R (>= 2.11.0), methods, Biobase, Rsamtools, GenomicAlignments |
| Imports | GenomicRanges, IRanges, edgeR, DESeq, DBI |
| System Requirements | |
| URL |
See More
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| Enhances | |
| Depends On Me | |
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| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | rnaSeqMap_2.42.0.tar.gz |
| Windows Binary | rnaSeqMap_2.42.0.zip |
| Mac OS X 10.11 (El Capitan) | rnaSeqMap_2.42.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/rnaSeqMap |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/rnaSeqMap |
| Bioc Package Browser | https://code.bioconductor.org/browse/rnaSeqMap/ |
| Package Short Url | https://bioconductor.org/packages/rnaSeqMap/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |