readat
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see readat.
Functionality to Read and Manipulate SomaLogic ADAT files
Bioconductor version: 3.9
This package contains functionality to import, transform and annotate data from ADAT files generated by the SomaLogic SOMAscan platform.
Author: Richard Cotton [cre, aut], Aditya Bhagwat [aut]
Maintainer: Richard Cotton <richierocks at gmail.com>
citation("readat")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("readat")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("readat")| Introduction | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, GeneExpression, OneChannel, ProprietaryPlatforms, Proteomics, Software |
| Version | 1.10.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (7.5 years) |
| License | GPL-3 |
| Depends | R (>= 3.4.0) |
| Imports | assertive.base (>= 0.0-7), assertive.files (>= 0.0-2), assertive.numbers (>= 0.0-2), assertive.properties (>= 0.0-4), assertive.sets (>= 0.0-3), assertive.types (>= 0.0-3), Biobase(>= 2.34.0), data.table (>= 1.10.4), dplyr (>= 0.5.0), magrittr (>= 1.5), openxlsx (>= 4.0.17), pathological (>= 0.1-2), reshape2 (>= 1.4.2), stats, stringi (>= 1.1.5), SummarizedExperiment(>= 1.4.0), testthat (>= 1.0.2), tidyr (>= 0.6.2), utils |
| System Requirements | |
| URL | https://bitbucket.org/graumannlabtools/readat |
| Bug Reports | https://bitbucket.org/graumannlabtools/readat/issues |
See More
| Suggests | knitr, MSnbase, rmarkdown, withr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | readat_1.10.0.tar.gz |
| Windows Binary | readat_1.10.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | readat_1.10.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/readat |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/readat |
| Bioc Package Browser | https://code.bioconductor.org/browse/readat/ |
| Package Short Url | https://bioconductor.org/packages/readat/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |