qPLEXanalyzer
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see qPLEXanalyzer.
Tools for qPLEX-RIME data analysis
Bioconductor version: 3.9
Tools for quantitative proteomics data analysis generated from qPLEX-RIME method.
Author: Matthew Eldridge [aut], Kamal Kishore [aut], Ashley Sawle [aut, cre]
Maintainer: Ashley Sawle <ads2202cu at gmail.com>
Citation (from within R, enter
citation("qPLEXanalyzer")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("qPLEXanalyzer")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("qPLEXanalyzer")| qPLEXanalyzer.pdf | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, ImmunoOncology, MassSpectrometry, Normalization, Preprocessing, Proteomics, QualityControl, Software |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.8 (R-3.5) (5.5 years) |
| License | GPL-2 |
| Depends | R (>= 3.6), Biobase, statmod, MSnbase |
| Imports | tidyr, preprocessCore, limma, ggplot2, RColorBrewer, stats, utils, Biostrings, GenomicRanges, IRanges, graphics, BiocGenerics, stringr, purrr, tibble, ggdendro, grDevices, dplyr, magrittr, assertthat |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/crukci-bioinformatics/qPLEXanalyzer/issues |
See More
| Suggests | UniProt.ws, knitr, qPLEXdata |
| Linking To | |
| Enhances | |
| Depends On Me | qPLEXdata |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | qPLEXanalyzer_1.2.0.tar.gz |
| Windows Binary | qPLEXanalyzer_1.2.0.zip |
| Mac OS X 10.11 (El Capitan) | qPLEXanalyzer_1.2.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/qPLEXanalyzer |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/qPLEXanalyzer |
| Bioc Package Browser | https://code.bioconductor.org/browse/qPLEXanalyzer/ |
| Package Short Url | https://bioconductor.org/packages/qPLEXanalyzer/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |