polyester
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see polyester.
Simulate RNA-seq reads
Bioconductor version: 3.9
This package can be used to simulate RNA-seq reads from differential expression experiments with replicates. The reads can then be aligned and used to perform comparisons of methods for differential expression.
Author: Alyssa C. Frazee, Andrew E. Jaffe, Rory Kirchner, Jeffrey T. Leek
Maintainer: Jack Fu <jmfu at jhsph.edu>, Jeff Leek <jtleek at gmail.com>
citation("polyester")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("polyester")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("polyester")| The Polyester package for simulating RNA-seq reads | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DifferentialExpression, Sequencing, Software |
| Version | 1.20.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (9.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.0.0) |
| Imports | Biostrings(>= 2.32.0), IRanges, S4Vectors, logspline, limma, zlibbioc |
| System Requirements | |
| URL |
See More
| Suggests | knitr, ballgown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | polyester_1.20.0.tar.gz |
| Windows Binary | polyester_1.20.0.zip |
| Mac OS X 10.11 (El Capitan) | polyester_1.20.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/polyester |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/polyester |
| Bioc Package Browser | https://code.bioconductor.org/browse/polyester/ |
| Package Short Url | https://bioconductor.org/packages/polyester/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |