plotGrouper
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see plotGrouper.
Shiny app GUI wrapper for ggplot with built-in statistical analysis
Bioconductor version: 3.9
A shiny app-based GUI wrapper for ggplot with built-in statistical analysis. Import data from file and use dropdown menus and checkboxes to specify the plotting variables, graph type, and look of your plots. Once created, plots can be saved independently or stored in a report that can be saved as a pdf. If new data are added to the file, the report can be refreshed to include new data. Statistical tests can be selected and added to the graphs. Analysis of flow cytometry data is especially integrated with plotGrouper. Count data can be transformed to return the absolute number of cells in a sample (this feature requires inclusion of the number of beads per sample and information about any dilution performed).
Author: John D. Gagnon [aut, cre]
Maintainer: John D. Gagnon <john.gagnon.42 at gmail.com>
citation("plotGrouper")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("plotGrouper")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("plotGrouper")| plotGrouper | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, FlowCytometry, GUI, GraphAndNetwork, ImmunoOncology, MultipleComparison, Software, StatisticalMethod |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.8 (R-3.5) (5.5 years) |
| License | GPL-3 |
| Depends | R (>= 3.5) |
| Imports | ggplot2 (>= 3.0.0), dplyr (>= 0.7.6), tidyr (>= 0.2.0), tibble (>= 1.4.2), stringr (>= 1.3.1), readr (>= 1.1.1), readxl (>= 1.1.0), scales (>= 1.0.0), stats, grid, gridExtra (>= 2.3), egg (>= 0.4.0), gtable (>= 0.2.0), ggpubr (>= 0.1.8), shiny (>= 1.1.0), shinythemes (>= 1.1.1), colourpicker (>= 1.0), magrittr (>= 1.5), Hmisc (>= 4.1.1), rlang (>= 0.2.2) |
| System Requirements | |
| URL | https://jdgagnon.github.io/plotGrouper/ |
| Bug Reports | https://github.com/jdgagnon/plotGrouper/issues |
See More
| Suggests | knitr, htmltools, BiocStyle, rmarkdown, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | plotGrouper_1.2.0.tar.gz |
| Windows Binary | plotGrouper_1.2.0.zip |
| Mac OS X 10.11 (El Capitan) | plotGrouper_1.2.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/plotGrouper |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/plotGrouper |
| Bioc Package Browser | https://code.bioconductor.org/browse/plotGrouper/ |
| Package Short Url | https://bioconductor.org/packages/plotGrouper/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |