pathVar
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see pathVar.
Methods to Find Pathways with Significantly Different Variability
Bioconductor version: 3.9
This package contains the functions to find the pathways that have significantly different variability than a reference gene set. It also finds the categories from this pathway that are significant where each category is a cluster of genes. The genes are separated into clusters by their level of variability.
Author: Laurence de Torrente, Samuel Zimmerman, Jessica Mar
Maintainer: Samuel Zimmerman <samuel.e.zimmerman at gmail.com>
citation("pathVar")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("pathVar")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pathVar")| Tutorial on How to Use the Functions in the \texttt{PathVar} Package | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GeneSetEnrichment, GeneticVariability, Pathways, Software |
| Version | 1.14.0 |
| In Bioconductor since | BioC 3.2 (R-3.2) (8.5 years) |
| License | LGPL (>= 2.0) |
| Depends | R (>= 3.3.0), methods, ggplot2, gridExtra |
| Imports | EMT, mclust, Matching, data.table, stats, grDevices, graphics, utils |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | pathVar_1.14.0.tar.gz |
| Windows Binary | pathVar_1.14.0.zip |
| Mac OS X 10.11 (El Capitan) | pathVar_1.14.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/pathVar |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/pathVar |
| Bioc Package Browser | https://code.bioconductor.org/browse/pathVar/ |
| Package Short Url | https://bioconductor.org/packages/pathVar/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |