nondetects
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see nondetects.
Non-detects in qPCR data
Bioconductor version: 3.9
Methods to model and impute non-detects in the results of qPCR experiments.
Author: Matthew N. McCall <mccallm at gmail.com>, Valeriia Sherina <valery.sherina at gmail.com>
Maintainer: Valeriia Sherina <valery.sherina at gmail.com>
Citation (from within R, enter
citation("nondetects")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("nondetects")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("nondetects")| Title of your vignette | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | AssayDomain, GeneExpression, Preprocessing, Software, Technology, WorkflowStep, qPCR |
| Version | 2.14.0 |
| In Bioconductor since | BioC 2.14 (R-3.1) (10 years) |
| License | GPL-3 |
| Depends | R (>= 3.2), Biobase(>= 2.22.0) |
| Imports | limma, mvtnorm, utils, methods, arm, HTqPCR(>= 1.16.0) |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown, BiocStyle(>= 1.0.0), RUnit, BiocGenerics(>= 0.8.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | nondetects_2.14.0.tar.gz |
| Windows Binary | nondetects_2.14.0.zip |
| Mac OS X 10.11 (El Capitan) | nondetects_2.14.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/nondetects |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/nondetects |
| Bioc Package Browser | https://code.bioconductor.org/browse/nondetects/ |
| Package Short Url | https://bioconductor.org/packages/nondetects/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |