netboost
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see netboost.
Network Analysis Supported by Boosting
Bioconductor version: 3.9
Boosting supported network analysis for high-dimensional omics applications. This package comes bundled with the MC-UPGMA clustering package by Yaniv Loewenstein.
Author: Pascal Schlosser [aut, cre], Jochen Knaus [aut, ctb], Yaniv Loewenstein [aut]
Maintainer: Pascal Schlosser <pascal.schlosser at uniklinik-freiburg.de>
citation("netboost")
):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("netboost")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("netboost")
The Netboost users guide | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | BiomedicalInformatics, Clustering, DimensionReduction, Epigenetics, GraphAndNetwork, Metabolomics, Network, Software, StatisticalMethod, Transcriptomics |
Version | 1.0.0 |
In Bioconductor since | BioC 3.9 (R-3.6) (5 years) |
License | GPL-3 |
Depends | R (>= 3.6.0) |
Imports | Rcpp, RcppParallel, parallel, grDevices, graphics, stats, utils, dynamicTreeCut, WGCNA, impute, colorspace, methods, R.utils |
System Requirements | GNU make, Bash, Perl, Gzip |
URL | https://github.com/PascalSchlosser/netboost |
Bug Reports | https://github.com/PascalSchlosser/netboost/issues |
See More
Suggests | knitr |
Linking To | Rcpp, RcppParallel |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | netboost_1.0.0.tar.gz |
Windows Binary | |
Mac OS X 10.11 (El Capitan) | netboost_1.0.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/netboost |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/netboost |
Bioc Package Browser | https://code.bioconductor.org/browse/netboost/ |
Package Short Url | https://bioconductor.org/packages/netboost/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.9 | Source Archive |