multiMiR
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see multiMiR.
Integration of multiple microRNA-target databases with their disease and drug associations
Bioconductor version: 3.9
A collection of microRNAs/targets from external resources, including validated microRNA-target databases (miRecords, miRTarBase and TarBase), predicted microRNA-target databases (DIANA-microT, ElMMo, MicroCosm, miRanda, miRDB, PicTar, PITA and TargetScan) and microRNA-disease/drug databases (miR2Disease, Pharmaco-miR VerSe and PhenomiR).
Author: Yuanbin Ru [aut], Matt Mulvahill [cre, aut], Spencer Mahaffey [aut], Katerina Kechris [aut, cph, ths]
Maintainer: Matt Mulvahill <matt.mulvahill at gmail.com>
citation("multiMiR")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("multiMiR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("multiMiR")| The multiMiR user's guide | HTML | R Script |
| Reference Manual | ||
| LICENSE | Text |
Details
| biocViews | Homo_sapiens_Data, Mus_musculus_Data, OrganismData, Rattus_norvegicus_Data, Software, miRNAData |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.6 (R-3.4) (6.5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 3.4) |
| Imports | stats, XML, RCurl, purrr (>= 0.2.2), tibble (>= 1.2), methods, BiocGenerics, AnnotationDbi, dplyr |
| System Requirements | |
| URL | https://github.com/KechrisLab/multiMiR |
| Bug Reports | https://github.com/KechrisLab/multiMiR/issues |
See More
| Suggests | BiocStyle, edgeR, knitr, rmarkdown, testthat (>= 1.0.2) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | multiMiR_1.6.0.tar.gz |
| Windows Binary | multiMiR_1.6.0.zip |
| Mac OS X 10.11 (El Capitan) | multiMiR_1.6.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/multiMiR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/multiMiR |
| Bioc Package Browser | https://code.bioconductor.org/browse/multiMiR/ |
| Package Short Url | https://bioconductor.org/packages/multiMiR/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |