lapmix
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see lapmix.
Laplace Mixture Model in Microarray Experiments
Bioconductor version: 3.9
Laplace mixture modelling of microarray experiments. A hierarchical Bayesian approach is used, and the hyperparameters are estimated using empirical Bayes. The main purpose is to identify differentially expressed genes.
Author: Yann Ruffieux, contributions from Debjani Bhowmick, Anthony C. Davison, and Darlene R. Goldstein
Maintainer: Yann Ruffieux <yann.ruffieux at epfl.ch>
citation("lapmix")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("lapmix")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("lapmix")| lapmix example | R Script | |
| Reference Manual |
Details
| biocViews | DifferentialExpression, Microarray, OneChannel, Software |
| Version | 1.50.0 |
| In Bioconductor since | BioC 1.9 (R-2.4) (17.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.6.0), stats |
| Imports | Biobase, graphics, grDevices, methods, stats, tools, utils |
| System Requirements | |
| URL | http://www.r-project.org http://www.bioconductor.org http://stat.epfl.ch |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | lapmix_1.50.0.tar.gz |
| Windows Binary | lapmix_1.50.0.zip |
| Mac OS X 10.11 (El Capitan) | lapmix_1.50.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/lapmix |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/lapmix |
| Bioc Package Browser | https://code.bioconductor.org/browse/lapmix/ |
| Package Short Url | https://bioconductor.org/packages/lapmix/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |