imageHTS
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see imageHTS.
Analysis of high-throughput microscopy-based screens
Bioconductor version: 3.9
imageHTS is an R package dedicated to the analysis of high-throughput microscopy-based screens. The package provides a modular and extensible framework to segment cells, extract quantitative cell features, predict cell types and browse screen data through web interfaces. Designed to operate in distributed environments, imageHTS provides a standardized access to remote data and facilitates the dissemination of high-throughput microscopy-based datasets.
Author: Gregoire Pau, Xian Zhang, Michael Boutros, Wolfgang Huber
Maintainer: Joseph Barry <joseph.barry at embl.de>
citation("imageHTS")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("imageHTS")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("imageHTS")| Analysis of high-throughput microscopy-based screens with imageHTS | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | CellBasedAssays, ImmunoOncology, Preprocessing, Software, Visualization |
| Version | 1.34.0 |
| In Bioconductor since | BioC 2.7 (R-2.12) (13.5 years) |
| License | LGPL-2.1 |
| Depends | R (>= 2.9.0), EBImage(>= 4.3.12), cellHTS2(>= 2.10.0) |
| Imports | tools, Biobase, hwriter, methods, vsn, stats, utils, e1071 |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, MASS |
| Linking To | |
| Enhances | |
| Depends On Me | PGPC |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | imageHTS_1.34.0.tar.gz |
| Windows Binary | imageHTS_1.34.0.zip |
| Mac OS X 10.11 (El Capitan) | imageHTS_1.34.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/imageHTS |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/imageHTS |
| Bioc Package Browser | https://code.bioconductor.org/browse/imageHTS/ |
| Package Short Url | https://bioconductor.org/packages/imageHTS/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |