iGC
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see iGC.
An integrated analysis package of Gene expression and Copy number alteration
Bioconductor version: 3.9
This package is intended to identify differentially expressed genes driven by Copy Number Alterations from samples with both gene expression and CNA data.
Author: Yi-Pin Lai [aut], Liang-Bo Wang [aut, cre], Tzu-Pin Lu [aut], Eric Y. Chuang [aut]
Maintainer: Liang-Bo Wang <r02945054 at ntu.edu.tw>
citation("iGC")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("iGC")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("iGC")| Introduction to iGC | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | AssayDomain, Biological Question, CopyNumberVariation, DifferentialExpression, GeneExpression, Genetics, GenomicVariation, Microarray, MultipleComparison, ResearchField, Sequencing, Software, Technology, WorkflowStep |
| Version | 1.14.0 |
| In Bioconductor since | BioC 3.2 (R-3.2) (8.5 years) |
| License | GPL-2 |
| Depends | R (>= 3.2.0) |
| Imports | plyr, data.table |
| System Requirements | |
| URL | http://github.com/ccwang002/iGC |
| Bug Reports | http://github.com/ccwang002/iGC/issues |
See More
| Suggests | BiocStyle, knitr, rmarkdown |
| Linking To | |
| Enhances | doMC |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | iGC_1.14.0.tar.gz |
| Windows Binary | iGC_1.14.0.zip |
| Mac OS X 10.11 (El Capitan) | iGC_1.14.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/iGC |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/iGC |
| Bioc Package Browser | https://code.bioconductor.org/browse/iGC/ |
| Package Short Url | https://bioconductor.org/packages/iGC/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |