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hypeR

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see hypeR.

Hyper Enrichment


Bioconductor version: 3.9

Geneset enrichment analysis based on hyper-geometric test.

Author: Anthony Federico <anfed at bu.edu>, Stefano Monti <smonti at bu.edu>

Maintainer: Anthony Federico <anfed at bu.edu>

Citation (from within R, enter citation("hypeR")):

Installation

To install this package, start R (version "3.6") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("hypeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("hypeR")
hypeR HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Annotation, GeneSetEnrichment, Pathways, Software
Version 1.00.0
In Bioconductor since BioC 3.9 (R-3.6) (5 years)
License GPL-3 + file LICENSE
Depends R (>= 3.6.0)
Imports plotly, DT, magrittr, dplyr, openxlsx, msigdbr
System Requirements
URL https://github.com/montilab/hypeR
Bug Reports https://github.com/montilab/hypeR/issues
See More
Suggests devtools, testthat, knitr, httr
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package hypeR_1.00.0.tar.gz
Windows Binary hypeR_1.00.0.zip
Mac OS X 10.11 (El Capitan) hypeR_1.00.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/hypeR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/hypeR
Bioc Package Browser https://code.bioconductor.org/browse/hypeR/
Package Short Url https://bioconductor.org/packages/hypeR/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive