gwasurvivr
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see gwasurvivr.
gwasurvivr: an R package for genome wide survival analysis
Bioconductor version: 3.9
gwasurvivr is a package to perform survival analysis using Cox proportional hazard models on imputed genetic data.
Author: Abbas Rizvi, Ezgi Karaesmen, Martin Morgan, Lara Sucheston-Campbell
Maintainer: Abbas Rizvi <aarizv at gmail.com>
Citation (from within R, enter
citation("gwasurvivr")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("gwasurvivr")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("gwasurvivr")| gwasurvivr Vignette | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | BiomedicalInformatics, GeneticVariability, Genetics, GenomeWideAssociation, Pharmacogenomics, Regression, SNP, Software, Survival |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.8 (R-3.5) (5.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.4.0) |
| Imports | GWASTools, survival, VariantAnnotation, parallel, matrixStats, SummarizedExperiment, stats, utils, SNPRelate |
| System Requirements | |
| URL | https://github.com/suchestoncampbelllab/gwasurvivr |
See More
| Suggests | BiocStyle, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | gwasurvivr_1.2.0.tar.gz |
| Windows Binary | gwasurvivr_1.2.0.zip |
| Mac OS X 10.11 (El Capitan) | gwasurvivr_1.2.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/gwasurvivr |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/gwasurvivr |
| Bioc Package Browser | https://code.bioconductor.org/browse/gwasurvivr/ |
| Package Short Url | https://bioconductor.org/packages/gwasurvivr/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |