gtrellis
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see gtrellis.
Genome Level Trellis Layout
Bioconductor version: 3.9
Genome level Trellis graph visualizes genomic data conditioned by genomic categories (e.g. chromosomes). For each genomic category, multiple dimensional data which are represented as tracks describe different features from different aspects. This package provides high flexibility to arrange genomic categories and to add self-defined graphics in the plot.
Author: Zuguang Gu
Maintainer: Zuguang Gu <z.gu at dkfz.de>
citation("gtrellis")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("gtrellis")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("gtrellis")| Make Genome-level Trellis Graph | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Sequencing, Software, Visualization |
| Version | 1.16.1 |
| In Bioconductor since | BioC 3.1 (R-3.2) (9 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 3.1.2), grid, IRanges, GenomicRanges |
| Imports | circlize (>= 0.4.8), GetoptLong, grDevices, utils |
| System Requirements | |
| URL | https://github.com/jokergoo/gtrellis |
See More
| Suggests | testthat (>= 1.0.0), knitr, RColorBrewer, markdown, ComplexHeatmap(>= 1.99.0), Cairo, png, jpeg, tiff |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | YAPSA |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | gtrellis_1.16.1.tar.gz |
| Windows Binary | gtrellis_1.16.1.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | gtrellis_1.16.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/gtrellis |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/gtrellis |
| Bioc Package Browser | https://code.bioconductor.org/browse/gtrellis/ |
| Package Short Url | https://bioconductor.org/packages/gtrellis/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |