globaltest
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see globaltest.
Testing Groups of Covariates/Features for Association with a Response Variable, with Applications to Gene Set Testing
Bioconductor version: 3.9
The global test tests groups of covariates (or features) for association with a response variable. This package implements the test with diagnostic plots and multiple testing utilities, along with several functions to facilitate the use of this test for gene set testing of GO and KEGG terms.
Author: Jelle Goeman and Jan Oosting, with contributions by Livio Finos, Aldo Solari and Dominic Edelmann
Maintainer: Jelle Goeman <j.j.goeman at lumc.nl>
citation("globaltest")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("globaltest")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("globaltest")| Global Test | R Script | |
| Reference Manual |
Details
| biocViews | Bioinformatics, DifferentialExpression, GO, Microarray, OneChannel, Pathways, Software |
| Version | 5.38.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 19 years) |
| License | GPL (>= 2) |
| Depends | methods, survival |
| Imports | Biobase, AnnotationDbi, annotate, graphics |
| System Requirements | |
| URL |
See More
| Suggests | vsn, golubEsets, KEGG.db, hu6800.db, Rgraphviz, GO.db, lungExpression, org.Hs.eg.db, GSEABase, penalized, gss, MASS, boot, rpart, mstate |
| Linking To | |
| Enhances | |
| Depends On Me | GlobalAncova |
| Imports Me | BiSeq, ChAMP, EGSEA, SIM |
| Suggests Me | topGO |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | globaltest_5.38.0.tar.gz |
| Windows Binary | globaltest_5.38.0.zip |
| Mac OS X 10.11 (El Capitan) | globaltest_5.38.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/globaltest |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/globaltest |
| Bioc Package Browser | https://code.bioconductor.org/browse/globaltest/ |
| Package Short Url | https://bioconductor.org/packages/globaltest/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |