globalSeq
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see globalSeq.
Global Test for Counts
Bioconductor version: 3.9
The method may be conceptualised as a test of overall significance in regression analysis, where the response variable is overdispersed and the number of explanatory variables exceeds the sample size. Useful for testing for association between RNA-Seq and high-dimensional data.
Author: Armin Rauschenberger [aut, cre]
Maintainer: Armin Rauschenberger <a.rauschenberger at vumc.nl>
citation("globalSeq")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("globalSeq")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("globalSeq")| article frame | HTML | |
| vignette frame | HTML | |
| vignette source | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DifferentialExpression, DimensionReduction, ExomeSeq, ExonArray, GeneExpression, GenomeWideAssociation, MultipleComparison, RNASeq, Regression, Sequencing, Software, Transcriptomics, WholeGenome, miRNA |
| Version | 1.12.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (8 years) |
| License | GPL-3 |
| Depends | R (>= 3.5.0) |
| Imports | |
| System Requirements | |
| URL | https://github.com/rauschenberger/globalSeq |
| Bug Reports | https://github.com/rauschenberger/globalSeq/issues |
See More
| Suggests | knitr, testthat, SummarizedExperiment, S4Vectors |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | globalSeq_1.12.0.tar.gz |
| Windows Binary | globalSeq_1.12.0.zip |
| Mac OS X 10.11 (El Capitan) | globalSeq_1.12.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/globalSeq |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/globalSeq |
| Bioc Package Browser | https://code.bioconductor.org/browse/globalSeq/ |
| Package Short Url | https://bioconductor.org/packages/globalSeq/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |