geneRecommender
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see geneRecommender.
A gene recommender algorithm to identify genes coexpressed with a query set of genes
Bioconductor version: 3.9
This package contains a targeted clustering algorithm for the analysis of microarray data. The algorithm can aid in the discovery of new genes with similar functions to a given list of genes already known to have closely related functions.
Author: Gregory J. Hather <ghather at stat.berkeley.edu>, with contributions from Art B. Owen <art at stat.stanford.edu> and Terence P. Speed <terry at stat.berkeley.edu>
Maintainer: Greg Hather <ghather at stat.berkeley.edu>
citation("geneRecommender")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("geneRecommender")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("geneRecommender")| Using the geneRecommender Package | R Script | |
| Reference Manual |
Details
| biocViews | Clustering, Microarray, Software |
| Version | 1.56.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 19 years) |
| License | GPL (>= 2) |
| Depends | R (>= 1.8.0), Biobase(>= 1.4.22), methods |
| Imports | Biobase, methods, stats |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | geneRecommender_1.56.0.tar.gz |
| Windows Binary | geneRecommender_1.56.0.zip |
| Mac OS X 10.11 (El Capitan) | geneRecommender_1.56.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/geneRecommender |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/geneRecommender |
| Bioc Package Browser | https://code.bioconductor.org/browse/geneRecommender/ |
| Package Short Url | https://bioconductor.org/packages/geneRecommender/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |