flowAI
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see flowAI.
Automatic and interactive quality control for flow cytometry data
Bioconductor version: 3.9
The package is able to perform an automatic or interactive quality control on FCS data acquired using flow cytometry instruments. By evaluating three different properties: 1) flow rate, 2) signal acquisition, 3) dynamic range, the quality control enables the detection and removal of anomalies.
Author: Gianni Monaco, Hao Chen
Maintainer: Gianni Monaco <gianni.monaco at unibas.ch>
citation("flowAI")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("flowAI")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("flowAI")| Automatic and GUI methods to do quality control on Flow cytometry Data | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | BiomedicalInformatics, FlowCytometry, ImmunoOncology, QualityControl, Software |
| Version | 1.14.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (8 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.4) |
| Imports | ggplot2, flowCore, plyr, changepoint, knitr, reshape2, RColorBrewer, scales, methods, graphics, stats, utils, rmarkdown |
| System Requirements | |
| URL |
See More
| Suggests | testthat, shiny |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | flowAI_1.14.0.tar.gz |
| Windows Binary | flowAI_1.14.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | flowAI_1.14.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/flowAI |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/flowAI |
| Bioc Package Browser | https://code.bioconductor.org/browse/flowAI/ |
| Package Short Url | https://bioconductor.org/packages/flowAI/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |