farms
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see farms.
FARMS - Factor Analysis for Robust Microarray Summarization
Bioconductor version: 3.9
The package provides the summarization algorithm called Factor Analysis for Robust Microarray Summarization (FARMS) and a novel unsupervised feature selection criterion called "I/NI-calls"
Author: Djork-Arne Clevert <okko at clevert.de>
Maintainer: Djork-Arne Clevert <okko at clevert.de>
citation("farms")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("farms")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("farms")| Using farms | R Script | |
| Reference Manual |
Details
| biocViews | GeneExpression, Microarray, Preprocessing, QualityControl, Software |
| Version | 1.36.0 |
| In Bioconductor since | BioC 2.7 (R-2.12) (13.5 years) |
| License | LGPL (>= 2.1) |
| Depends | R (>= 2.8), affy(>= 1.20.0), MASS, methods |
| Imports | affy, MASS, Biobase(>= 1.13.41), methods, graphics |
| System Requirements | |
| URL | http://www.bioinf.jku.at/software/farms/farms.html |
See More
| Suggests | affydata, Biobase, utils |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | DEqMS |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | farms_1.36.0.tar.gz |
| Windows Binary | farms_1.36.0.zip |
| Mac OS X 10.11 (El Capitan) | farms_1.36.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/farms |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/farms |
| Bioc Package Browser | https://code.bioconductor.org/browse/farms/ |
| Package Short Url | https://bioconductor.org/packages/farms/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |