fCI
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see fCI.
f-divergence Cutoff Index for Differential Expression Analysis in Transcriptomics and Proteomics
Bioconductor version: 3.9
(f-divergence Cutoff Index), is to find DEGs in the transcriptomic & proteomic data, and identify DEGs by computing the difference between the distribution of fold-changes for the control-control and remaining (non-differential) case-control gene expression ratio data. fCI provides several advantages compared to existing methods.
Author: Shaojun Tang
Maintainer: Shaojun Tang <tangshao2008 at gmail.com>
citation("fCI")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("fCI")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("fCI")| fCI | HTML | R Script |
| Reference Manual |
Details
| biocViews | Proteomics, Software |
| Version | 1.14.0 |
| In Bioconductor since | BioC 3.2 (R-3.2) (8.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.1), FNN, psych, gtools, zoo, rgl, grid, VennDiagram |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | fCI_1.14.0.tar.gz |
| Windows Binary | fCI_1.14.0.zip |
| Mac OS X 10.11 (El Capitan) | fCI_1.14.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/fCI |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/fCI |
| Bioc Package Browser | https://code.bioconductor.org/browse/fCI/ |
| Package Short Url | https://bioconductor.org/packages/fCI/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |